# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.04787	a.248.1.1	133507
1txgA	335	9.317	a.100.1.6,c.2.1.6	112775,112776
1e0gA	48	14.51	d.7.1.1	37325
2akaA	776	14.52		
2bkhA	814	15.58		
1w7jA	795	18.69	b.34.3.1,c.37.1.9	120688,120689
1w9iA	770	18.92		
1jf8A	131	33.19	c.44.1.1	66621
2imfA	203	35.17		
1ui8A	638	35.54	b.30.2.1,d.17.2.1,d.17.2.1	99419,99420,99421
1ksiB	642	36.60	b.30.2.1,d.17.2.1,d.17.2.1	24409,38045,38046
1dlwA	116	37.12	a.1.1.1	14982
2fzpA	144	39.31		
2ewtA	71	44.24		
2ofyA	86	45.02		
2v26A	784	45.87		
1pczA	191	51.42	d.129.1.1,d.129.1.1	41292,41293
1yaaA	412	52.09	c.67.1.1	34280
1mvwA	840	52.65	i.15.1.1	79523
1lvk	762	53.66		
1br2A	791	53.74	b.34.3.1,c.37.1.9	24558,32155
2jucA	59	55.30		
1fe0A	68	55.96	d.58.17.1	39345
2ogbA	126	57.96		
1d0yA	761	62.29	b.34.3.1,c.37.1.9	24581,32178
2qnuA	226	63.17		
2gwfB	134	68.21		
1yzxA	226	74.59		
1lmb3	92	78.17		
2ezkA	99	79.42	a.4.1.2	16027
2bnmA	198	81.07	a.35.1.3,b.82.1.10	128835,128836
2aorA	223	81.29		
1na3A	91	81.30	k.38.1.1	85481
1jl3A	139	82.90	c.44.1.1	66826
1wdvA	152	82.91	d.116.1.1	114539
2r1jL	68	84.48		
2vl6A	268	87.91