# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fi0A 81 0.000425 a.248.1.1 133507 1e0gA 48 1.484 d.7.1.1 37325 1jf8A 131 1.856 c.44.1.1 66621 1peqA 714 2.619 a.98.1.1,c.7.1.2 104131,104132 1yaaA 412 2.863 c.67.1.1 34280 2rfmA 192 3.980 2zfoB 142 4.282 2jabA 136 5.563 2jucA 59 6.199 1y75A 118 6.786 2pq6A 482 7.769 1aokA 122 8.073 a.133.1.2 19560 2btoA 473 8.127 1bifA 469 9.011 c.37.1.7,c.60.1.4 31961,34003 1cf2O 337 9.376 c.2.1.3,d.81.1.1 29994,39909 1u55A 188 10.13 d.278.1.1 107677 1aokB 122 10.63 a.133.1.2 19561 1qhoA 686 11.21 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 1yxhA 126 11.27 1jltB 122 11.30 a.133.1.2 66868 1s6bA 119 12.47 a.133.1.2 98592 3c0bA 334 12.55 2hbvA 334 12.63 c.1.9.15 136320 1a2aA 122 12.83 a.133.1.2 19540 1zunB 434 12.84 b.43.3.1,b.44.1.1,c.37.1.8 125677,125678,125679 1ae7A 119 13.64 a.133.1.2 19553 1mc2A 122 14.13 a.133.1.2 74622 1yzxA 226 14.17 1xxsA 122 14.24 1ayfA 105 15.04 d.15.4.1 37684 1yxlA 119 15.63 a.133.1.2 124191 2veqA 565 17.09 1d3uA 181 18.40 d.129.1.1,d.129.1.1 41290,41291 1v73A 342 18.53 1s8iA 121 19.13 a.133.1.2 98735 1o4yA 288 19.45 b.29.1.2 92473 1dlwA 116 21.00 a.1.1.1 14982 1s6bB 119 23.73 a.133.1.2 98593 1ympA 135 24.68 2jdxA 385 24.89 d.126.1.2 41139 1y75B 118 25.79 1dghB 498 25.99 e.5.1.1 42791 2iw2A 494 26.72 1fe0A 68 27.14 d.58.17.1 39345 1p2fA 220 27.17 a.4.6.1,c.23.1.1 87720,87721 1txgA 335 28.33 a.100.1.6,c.2.1.6 112775,112776 3bq5A 766 28.87 1g4iA 123 29.91 a.133.1.2 60241 1sddA 306 29.99 b.6.1.3,b.6.1.3 105431,105432 2fzpA 144 30.69 3c5rA 137 31.26 2vgeA 229 31.93 2imfA 203 32.19 2ofyA 86 33.04 1q48A 134 33.88 d.224.1.2 95783 1u3eM 174 34.00 d.4.1.3,d.285.1.1 107640,107641 2d74B 148 34.52 2pajA 492 34.61 1ox6A 555 34.71 c.1.2.1,c.23.16.1 87505,87506 1jwhA 337 35.26 d.144.1.7 71913 1kvoA 124 35.66 a.133.1.2 19564 1x9fB 145 35.85 a.1.1.2 114984 1xrsA 516 37.34 c.1.19.4 115883 2qnuA 226 37.58 1tksA 204 37.94 d.115.1.2 107114 1oneA 436 39.63 c.1.11.1,d.54.1.1 29200,38844 1jc4A 148 40.93 d.32.1.4 62863 1c30B 382 41.92 c.8.3.1,c.23.16.1 30736,31413 2pgfA 371 41.99 1etxA 98 42.58 a.4.1.12 18978 1fcdA 401 42.85 c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1jl3A 139 43.52 c.44.1.1 66826 2ewtA 71 46.10 1y4lA 121 46.12 a.133.1.2 122624 2e84A 556 48.26 1lrzA 426 48.84 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1vqrA 297 53.10 a.211.1.3 114015 1qycA 308 53.89 c.2.1.2 96581 1gadO 330 54.24 c.2.1.3,d.81.1.1 29950,39865 3c8yA 574 55.37 1cg5A 141 55.51 a.1.1.2 15406 1qg4A 216 55.89 c.37.1.8 32035 1dgfA 497 56.15 e.5.1.1 42782 2ogbA 126 56.18 1w7jA 795 56.48 b.34.3.1,c.37.1.9 120688,120689 1hrnA 337 56.83 b.50.1.2 26869 1yg9A 330 57.55 1wdvA 152 57.88 d.116.1.1 114539 1pczA 191 58.75 d.129.1.1,d.129.1.1 41292,41293 2f8yA 223 58.81 2ccmA 191 59.25 1lmb3 92 61.91 1huxA 270 62.32 c.55.1.5 61278 1vjoA 393 63.44 c.67.1.3 100827 1a4fA 141 64.93 a.1.1.2 15394 2al6A 375 65.24 a.11.2.1,b.55.1.5,d.15.1.4 126966,126967,126968 1z67A 135 65.33 a.259.1.1 124507 2gwfB 134 65.52 1sw2A 275 66.13 c.94.1.1 106064 1lliA 92 66.78 a.35.1.2 17025 1pcxA 810 66.97 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 94497,94498,94499,94500,94501 2pl2A 217 67.88 1m7sA 484 68.85 e.5.1.1 74574 1na3A 91 69.37 k.38.1.1 85481 1nu5A 370 69.38 c.1.11.2,d.54.1.1 92183,92184 1w9iA 770 69.57 2o2xA 218 71.40 1zxmA 400 71.57 2goyA 275 71.62 2g29A 417 72.26 2vl6A 268 74.30 1bif 469 74.42 1n0qA 93 74.65 k.37.1.1 79754 2cvzA 289 74.85 a.100.1.1,c.2.1.6 130890,130891 2p51A 333 77.16 1b7gO 340 78.01 c.2.1.3,d.81.1.1 29992,39907 1xx1A 285 78.73 1rwiA 270 79.31 b.68.9.1 97987 2q2jA 121 79.87 2rfaA 232 79.88 1vapA 123 81.23 a.133.1.2 19548 1m6bA 621 81.50 c.10.2.5,c.10.2.5,g.3.9.1,g.3.9.1 74521,74522,74523,74524 2aa1A 144 81.77 a.1.1.2 126463 1babA 143 82.58 a.1.1.2 15235 1eg5A 384 84.59 c.67.1.3 34429 1axgA 374 84.72 b.35.1.2,c.2.1.1 24691,29707 1y6uA 70 84.75 1ad1A 266 86.38 c.1.21.1 29668 2ezkA 99 86.61 a.4.1.2 16027 1s6cA 183 86.78 a.39.1.5 98594 2eqpA 50 86.83 2yrrA 353 88.13 1rlrA 761 89.20 a.98.1.1,c.7.1.2 18753,30679 2axtC 473 89.42