# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.04561	a.248.1.1	133507
1txgA	335	8.800	a.100.1.6,c.2.1.6	112775,112776
1e0gA	48	12.55	d.7.1.1	37325
2akaA	776	16.27		
2bkhA	814	16.83		
1w7jA	795	21.92	b.34.3.1,c.37.1.9	120688,120689
1w9iA	770	22.46		
1dlwA	116	28.87	a.1.1.1	14982
1jf8A	131	30.38	c.44.1.1	66621
2fzpA	144	33.80		
2imfA	203	38.08		
1ksiB	642	41.65	b.30.2.1,d.17.2.1,d.17.2.1	24409,38045,38046
1ui8A	638	44.19	b.30.2.1,d.17.2.1,d.17.2.1	99419,99420,99421
1fe0A	68	47.83	d.58.17.1	39345
2ogbA	126	49.30		
1br2A	791	51.78	b.34.3.1,c.37.1.9	24558,32155
2ewtA	71	52.50		
1yaaA	412	54.38	c.67.1.1	34280
2ofyA	86	56.28		
2v26A	784	56.75		
1pczA	191	57.41	d.129.1.1,d.129.1.1	41292,41293
2gwfB	134	59.63		
1na3A	91	60.29	k.38.1.1	85481
2qnuA	226	62.97		
1lvk	762	64.92		
1mvwA	840	71.97	i.15.1.1	79523
1d0yA	761	72.96	b.34.3.1,c.37.1.9	24581,32178
2pl2A	217	73.60		
1yzxA	226	73.83		
1otgA	125	75.10	d.80.1.2	39831
2ezkA	99	77.91	a.4.1.2	16027
2aorA	223	82.07		
2avpA	70	83.04	k.38.1.1	127382
2vq2A	225	83.31		
2ho1A	252	84.88		
1vjoA	393	85.16	c.67.1.3	100827
1jl3A	139	86.64	c.44.1.1	66826
2jucA	59	88.27