# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.04500	a.248.1.1	133507
1e0gA	48	8.666	d.7.1.1	37325
1txgA	335	10.31	a.100.1.6,c.2.1.6	112775,112776
2fzpA	144	15.59		
2jucA	59	17.18		
2qnuA	226	18.43		
2ogbA	126	20.44		
1w7jA	795	21.76	b.34.3.1,c.37.1.9	120688,120689
1w9iA	770	24.22		
2akaA	776	24.35		
1aokB	122	25.15	a.133.1.2	19561
2gwfB	134	25.30		
1aokA	122	26.91	a.133.1.2	19560
1kvoA	124	27.55	a.133.1.2	19564
1dlwA	116	27.78	a.1.1.1	14982
1fe0A	68	30.70	d.58.17.1	39345
1jf8A	131	36.09	c.44.1.1	66621
2bkhA	814	37.54		
1mvwA	840	39.29	i.15.1.1	79523
1ksiB	642	41.66	b.30.2.1,d.17.2.1,d.17.2.1	24409,38045,38046
1cg5A	141	43.13	a.1.1.2	15406
1v5vA	401	45.53	b.44.2.1,d.250.1.1	113539,113540
1pczA	191	46.98	d.129.1.1,d.129.1.1	41292,41293
1ae7A	119	48.69	a.133.1.2	19553
2imfA	203	49.11		
1y75A	118	56.08		
1x9fB	145	58.44	a.1.1.2	114984
1hdsA	141	59.87	a.1.1.2	15378
1y4lA	121	60.06	a.133.1.2	122624
2h26A	291	60.53	b.1.1.2,d.19.1.1	135990,135991
1cc8A	73	61.22	d.58.17.1	39343
2vl6A	268	65.74		
2aorA	223	66.43		
1mc2A	122	69.10	a.133.1.2	74622
1xnfA	275	69.75	a.118.8.1	115580
2pl2A	217	71.27		
1x9fA	151	71.79	a.1.1.2	114983
2qywA	102	71.80		
2vgxA	148	72.86		
1zlbA	122	73.88	a.133.1.2	125248
2eqpA	50	74.86		
2g58A	121	75.81	a.133.1.2	134645
1jltA	122	76.45	a.133.1.2	66867
1jl3A	139	76.47	c.44.1.1	66826
1oqsB	122	76.89	a.133.1.2	93428
2ho1A	252	77.46		
1jltB	122	78.25	a.133.1.2	66868
1br2A	791	78.75	b.34.3.1,c.37.1.9	24558,32155
1yxhA	126	79.78		
1hn4A	131	83.11	a.133.1.2	65893
1xxsA	122	83.43		
2d2mB	142	85.65		
2ezkA	99	87.19	a.4.1.2	16027
1g4iA	123	87.79	a.133.1.2	60241