# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.03363	a.248.1.1	133507
1e0gA	48	4.201	d.7.1.1	37325
1txgA	335	8.426	a.100.1.6,c.2.1.6	112775,112776
2jucA	59	13.21		
1w7jA	795	13.27	b.34.3.1,c.37.1.9	120688,120689
2fzpA	144	14.74		
1ksiB	642	18.66	b.30.2.1,d.17.2.1,d.17.2.1	24409,38045,38046
1dlwA	116	19.13	a.1.1.1	14982
2bkhA	814	19.50		
2akaA	776	19.93		
1w9iA	770	20.60		
2ogbA	126	20.75		
2gwfB	134	27.53		
1jf8A	131	29.07	c.44.1.1	66621
2imfA	203	29.62		
1fe0A	68	34.47	d.58.17.1	39345
1x9fB	145	36.86	a.1.1.2	114984
1kvoA	124	36.92	a.133.1.2	19564
1jl3A	139	37.56	c.44.1.1	66826
1mvwA	840	37.59	i.15.1.1	79523
1pczA	191	38.99	d.129.1.1,d.129.1.1	41292,41293
1yaaA	412	39.61	c.67.1.1	34280
2qnuA	226	39.82		
1aokA	122	45.17	a.133.1.2	19560
2aorA	223	48.15		
1br2A	791	50.77	b.34.3.1,c.37.1.9	24558,32155
1ui8A	638	51.31	b.30.2.1,d.17.2.1,d.17.2.1	99419,99420,99421
2d2mB	142	54.26		
1aokB	122	55.00	a.133.1.2	19561
1xnfA	275	56.37	a.118.8.1	115580
2pl2A	217	65.14		
1cg5A	141	65.86	a.1.1.2	15406
1hdsA	141	66.00	a.1.1.2	15378
1lvk	762	68.56		
1y4lA	121	69.39	a.133.1.2	122624
2eqpA	50	70.44		
1d0yA	761	72.28	b.34.3.1,c.37.1.9	24581,32178
1x9fA	151	73.32	a.1.1.2	114983
1sw2A	275	75.32	c.94.1.1	106064
2v26A	784	76.02		
1ae7A	119	79.63	a.133.1.2	19553
1cc8A	73	79.90	d.58.17.1	39343
2ho1A	252	80.17		
1zmoA	244	80.59		
2vl6A	268	83.02		
1mc2A	122	84.39	a.133.1.2	74622
1na3A	91	85.96	k.38.1.1	85481
2h26A	291	87.51	b.1.1.2,d.19.1.1	135990,135991
2vgxA	148	88.03