# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.01570	a.248.1.1	133507
1e0gA	48	3.945	d.7.1.1	37325
1txgA	335	6.744	a.100.1.6,c.2.1.6	112775,112776
1w7jA	795	14.24	b.34.3.1,c.37.1.9	120688,120689
2bkhA	814	14.51		
2akaA	776	14.75		
1ksiB	642	15.06	b.30.2.1,d.17.2.1,d.17.2.1	24409,38045,38046
1w9iA	770	16.17		
1fe0A	68	18.31	d.58.17.1	39345
1dlwA	116	20.86	a.1.1.1	14982
2fzpA	144	24.83		
1mvwA	840	24.97	i.15.1.1	79523
2jucA	59	31.16		
2ogbA	126	34.40		
2qnuA	226	35.14		
1pczA	191	36.18	d.129.1.1,d.129.1.1	41292,41293
1jf8A	131	36.73	c.44.1.1	66621
1ui8A	638	37.75	b.30.2.1,d.17.2.1,d.17.2.1	99419,99420,99421
2imfA	203	39.23		
1x9fB	145	40.85	a.1.1.2	114984
2aorA	223	42.21		
1cc8A	73	43.09	d.58.17.1	39343
2gwfB	134	46.51		
1br2A	791	47.69	b.34.3.1,c.37.1.9	24558,32155
2ezkA	99	48.05	a.4.1.2	16027
2eqpA	50	54.03		
2v26A	784	56.82		
1kvoA	124	58.10	a.133.1.2	19564
2d2mB	142	58.55		
1yaaA	412	58.64	c.67.1.1	34280
1aokA	122	60.17	a.133.1.2	19560
1d0yA	761	60.48	b.34.3.1,c.37.1.9	24581,32178
2ewtA	71	60.85		
1hdsA	141	61.35	a.1.1.2	15378
1jl3A	139	61.47	c.44.1.1	66826
1y75A	118	62.60		
1x9fA	151	65.14	a.1.1.2	114983
1lvk	762	65.78		
2vl6A	268	67.77		
1jlnA	297	68.21	c.45.1.2	63172
1aokB	122	69.29	a.133.1.2	19561
1yzxA	226	71.09		
1sw2A	275	71.49	c.94.1.1	106064
2j01U	118	74.78		
2pl2A	217	75.21		
2rn7A	108	76.14		
2aa1A	144	77.75	a.1.1.2	126463
1cg5A	141	79.24	a.1.1.2	15406
2eklA	313	79.89		
2gu1A	361	83.05		
1xnfA	275	84.77	a.118.8.1	115580
2oqeA	660	87.65	b.30.2.1,d.17.2.1,d.17.2.1	139222,139223,139224
1zz1A	369	87.90		
2h26A	291	89.06	b.1.1.2,d.19.1.1	135990,135991