# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.1098	a.248.1.1	133507
1txgA	335	13.82	a.100.1.6,c.2.1.6	112775,112776
2fzpA	144	24.98		
1aokB	122	26.10	a.133.1.2	19561
1y75A	118	28.87		
2qnuA	226	31.39		
1vjoA	393	36.79	c.67.1.3	100827
1fe0A	68	37.70	d.58.17.1	39345
1aokA	122	39.28	a.133.1.2	19560
1lliA	92	40.22	a.35.1.2	17025
1ae7A	119	42.29	a.133.1.2	19553
1lmb3	92	42.59		
1kvoA	124	42.85	a.133.1.2	19564
2ogbA	126	43.94		
1y75B	118	46.11		
1g4iA	123	46.23	a.133.1.2	60241
1oqsB	122	47.33	a.133.1.2	93428
1e0gA	48	48.17	d.7.1.1	37325
1w7jA	795	49.96	b.34.3.1,c.37.1.9	120688,120689
3cq9A	227	50.47		
1y4lA	121	53.17	a.133.1.2	122624
2akaA	776	54.98		
2gwfB	134	57.27		
1hn4A	131	58.49	a.133.1.2	65893
1s6bB	119	59.31	a.133.1.2	98593
1ksiB	642	60.38	b.30.2.1,d.17.2.1,d.17.2.1	24409,38045,38046
1jltB	122	60.61	a.133.1.2	66868
1w9iA	770	61.60		
1yxhA	126	63.29		
1mc2A	122	66.68	a.133.1.2	74622
2g58A	121	67.62	a.133.1.2	134645
1jf8A	131	76.88	c.44.1.1	66621
1jltA	122	80.37	a.133.1.2	66867
1zlbA	122	80.54	a.133.1.2	125248
2q2jA	121	80.98		
1vapA	123	82.89	a.133.1.2	19548
1xxsA	122	83.13		
1s6bA	119	84.57	a.133.1.2	98592