# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.1132	a.248.1.1	133507
1e0gA	48	17.75	d.7.1.1	37325
1aokB	122	22.09	a.133.1.2	19561
1txgA	335	24.08	a.100.1.6,c.2.1.6	112775,112776
2qnuA	226	34.65		
1aokA	122	37.00	a.133.1.2	19560
1ae7A	119	37.06	a.133.1.2	19553
1kvoA	124	37.40	a.133.1.2	19564
1ksiB	642	37.49	b.30.2.1,d.17.2.1,d.17.2.1	24409,38045,38046
2fzpA	144	39.46		
1w7jA	795	39.51	b.34.3.1,c.37.1.9	120688,120689
1zc0A	309	42.01		
1jlnA	297	46.19	c.45.1.2	63172
1lliA	92	46.26	a.35.1.2	17025
2imfA	203	48.03		
1y75A	118	52.93		
1mvwA	840	54.14	i.15.1.1	79523
1y4lA	121	59.50	a.133.1.2	122624
1lmb3	92	62.90		
1q9iA	571	63.63	a.138.1.3,c.3.1.4,d.168.1.1	96273,96274,96275
1mc2A	122	67.10	a.133.1.2	74622
1w9iA	770	68.82		
1oqsB	122	69.36	a.133.1.2	93428
1yxhA	126	70.14		
2akaA	776	71.53		
1ui8A	638	71.81	b.30.2.1,d.17.2.1,d.17.2.1	99419,99420,99421
1zlbA	122	71.93	a.133.1.2	125248
1jltA	122	73.25	a.133.1.2	66867
2jucA	59	77.19		
1v5vA	401	79.96	b.44.2.1,d.250.1.1	113539,113540
1otgA	125	81.18	d.80.1.2	39831
2ogbA	126	81.23		
2g58A	121	85.16	a.133.1.2	134645
1jltB	122	89.37	a.133.1.2	66868