# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fi0A 81 4.86e-05 a.248.1.1 133507 1jb9A 316 0.6190 b.43.4.2,c.25.1.1 62840,62841 2dklA 85 2.489 a.5.2.1 131555 2qnuA 226 3.428 1ogiA 303 3.783 b.43.4.2,c.25.1.1 92914,92915 2ooaA 52 4.294 1qg0A 308 4.659 b.43.4.2,c.25.1.1 25639,31529 1qh0A 295 4.910 b.43.4.2,c.25.1.1 68891,68892 2b5oA 402 4.926 1b2rA 304 5.171 b.43.4.2,c.25.1.1 25648,31538 1fndA 314 5.205 b.43.4.2,c.25.1.1 25626,31516 3bnjA 485 6.568 1bx1A 314 7.080 b.43.4.2,c.25.1.1 25629,31519 2r7aA 256 9.078 1fnc 314 10.25 1go2A 304 10.36 b.43.4.2,c.25.1.1 76243,76244 1etxA 98 10.55 a.4.1.12 18978 2ofyA 86 11.16 2eggA 297 12.18 1fs7A 485 12.57 a.138.1.3 19691 2bkhA 814 12.89 1vejA 74 13.73 a.5.2.1 120020 1k6kA 143 14.06 a.174.1.1 77274 1e0gA 48 14.28 d.7.1.1 37325 1vekA 84 16.06 a.5.2.1 113636 1dxsA 80 16.08 a.60.1.2 17944 2imfA 203 17.10 1x24A 180 18.87 1qdbA 473 19.49 a.138.1.3 19688 1zarA 282 19.66 a.4.5.56,d.144.1.9 124843,124844 2bsaA 303 20.14 b.43.4.2,c.25.1.1 129078,129079 1xzoA 174 20.60 c.47.1.10 122474 1w9iA 770 22.55 2cp8A 54 22.91 a.5.2.1 130695 3c9pA 123 25.07 1u9lA 70 26.39 a.60.4.2 107751 2ezhA 75 27.17 a.4.1.2 16029 1t1dA 100 27.44 d.42.1.2 38637 1zckA 154 27.77 1ig0A 319 27.96 b.82.6.1,c.100.1.1 62354,62355 1fipA 98 28.20 a.4.1.12 18980 2in3A 216 28.46 1i74A 309 28.58 c.107.1.1 61867 2h56A 233 28.73 1jihA 531 28.92 d.240.1.1,e.8.1.7 90374,90375 2dgdA 223 28.93 1zelA 298 28.95 1p90A 145 31.13 c.55.5.2 94377 1h7eA 245 33.41 c.68.1.13 60717 2i57A 438 34.10 1ig3A 263 34.68 b.82.6.1,c.100.1.1 62358,62359 2yw2A 424 35.10 2pr7A 137 36.12 1z96A 40 36.72 1pbjA 125 37.97 d.37.1.1,d.37.1.1 94414,94415 2j16A 182 38.08 1ixsA 62 38.62 a.5.1.1 76932 2v26A 784 39.68 1rd5A 262 40.16 c.1.2.4 111772 1w34A 304 42.58 b.43.4.2,c.25.1.1 120620,120621 2bwbA 46 43.18 a.5.2.1 129329 2ew2A 316 43.71 1w7jA 795 43.85 b.34.3.1,c.37.1.9 120688,120689 1l3lA 234 47.19 a.4.6.2,d.110.5.1 73541,73542 2qhoB 53 48.87 2jabA 136 50.26 1gx1A 160 50.30 d.79.5.1 70675 1wi9A 72 50.97 a.4.5.47 114663 1v77A 212 52.24 c.6.3.2 108402 2j01U 118 52.57 2b5aA 77 53.91 a.35.1.3 127882 1m7sA 484 54.13 e.5.1.1 74574 1v38A 78 56.00 a.60.1.2 100280 2yx6A 121 56.18 1o13A 136 56.78 c.55.5.1 80762 2nlyA 245 57.35 c.6.2.7 138364 1ifyA 49 57.84 a.5.2.1 71207 1vj0A 380 58.06 b.35.1.2,c.2.1.1 100786,100787 2h7bA 105 60.07 1u4gA 301 60.10 d.92.1.2 107670 1lm5A 214 60.74 d.211.2.1 74029 1mvwA 840 61.29 i.15.1.1 79523 2ezkA 99 61.40 a.4.1.2 16027 1ccwA 137 62.17 c.23.6.1 31238 2p0lA 288 62.43 1l0oC 243 62.95 a.4.13.2 73405 1p77A 272 63.64 c.2.1.7,c.58.1.5 94214,94215 2gu1A 361 63.97 1sqiA 393 64.10 d.32.1.3,d.32.1.3 105914,105915 1qo8A 566 64.51 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 2d5cA 263 64.91 3b84A 119 65.78 1wr1B 58 66.14 a.5.2.1 121185 2cw6A 298 66.28 1b72B 87 67.93 a.4.1.1 16001 1vdlA 80 68.02 a.5.2.1 108528 1rxdA 159 69.18 c.45.1.1 111959 2if5A 120 69.54 1nytA 271 70.54 c.2.1.7,c.58.1.5 86417,86418 1rz3A 201 71.34 c.37.1.6 98132 2yxbA 161 71.64 2yrxA 451 71.88 2g9zA 348 72.06 2rfmA 192 73.62 1zv1A 65 73.98 1b0xA 94 74.12 a.60.1.2 17933 1s5uA 138 74.66 d.38.1.1 98573 2vpkA 116 75.19 2f46A 156 76.06 2bo1A 101 77.75 2nloA 302 78.30 1cvrA 435 78.38 b.1.18.12,c.17.1.2 21949,31006 2hy5A 130 79.24 c.114.1.1 136865 2d2mB 142 79.62 2qtzA 539 80.31 3rabA 169 80.42 c.37.1.8 32018 1ebbA 202 80.52 c.60.1.1 64900 1y6uA 70 80.63 2hdoA 209 81.20 c.108.1.6 136345 2ob3A 330 81.73 1h2eA 207 84.37 c.60.1.1 70857 2ebuA 112 85.49 2hk9A 275 85.65 1v95A 130 86.12 c.51.1.1 108435 2zhgA 154 87.38 1udzA 182 87.91 b.51.1.1 99239 1yrvA 169 88.16 d.20.1.1 123941 2nt2A 145 88.97