Best Alignments for TR469

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2fi0A	1.4053e-01	2fi0A/TR469-2fi0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.248.1.1
1w9iA	1.1293e+01	1w9iA/TR469-1w9iA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1u3eM	2.2795e+01	1u3eM/TR469-1u3eM-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.4.1.3 d.285.1.1
2v26A	2.6284e+01	2v26A/TR469-2v26A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1w7jA	2.7472e+01	1w7jA/TR469-1w7jA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.3.1 c.37.1.9
1y6uA	2.7817e+01	1y6uA/TR469-1y6uA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2d5rB	3.3974e+01	2d5rB/TR469-2d5rB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2gwfB	3.8716e+01	2gwfB/TR469-2gwfB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2bkhA	3.9806e+01	2bkhA/TR469-2bkhA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1fe0A	4.4349e+01	1fe0A/TR469-1fe0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.58.17.1
2qnuA	4.7314e+01	2qnuA/TR469-2qnuA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ogiA	4.9285e+01	1ogiA/TR469-1ogiA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.43.4.2 c.25.1.1
2j01U	5.3629e+01	2j01U/TR469-2j01U-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1qw1A	5.6907e+01	1qw1A/TR469-1qw1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ae7A	5.9247e+01	1ae7A/TR469-1ae7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.133.1.2
2nxoA	5.9856e+01	2nxoA/TR469-2nxoA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2z15A	7.2726e+01	2z15A/TR469-2z15A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1gbs	7.4883e+01	1gbs/TR469-1gbs-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2z51A	7.6051e+01	2z51A/TR469-2z51A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2al3A	7.6859e+01	2al3A/TR469-2al3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.15.1.2

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001