# TARGET TR469 # Using neural net dunbrack-40pc-3157-t06-IDGaaH13-3-13-7-13-9-13-11-pb-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 16 (1 pb ) # The input amino acid frequencies were determined from # alignment TR469.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 20.0325 # Pos AA A B C D E F G H I J K L M N O P 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 Q 0.185 0.036 0.186 0.311 0.010 0.069 0.022 0.008 0.012 0.011 0.028 0.029 0.059 0.003 0.006 0.025 2 K 0.056 0.121 0.260 0.362 0.008 0.070 0.006 0.006 0.009 0.003 0.023 0.018 0.029 0.002 0.003 0.023 3 F 0.033 0.042 0.115 0.460 0.054 0.106 0.033 0.006 0.004 0.006 0.045 0.042 0.033 0.011 0.003 0.007 4 T 0.007 0.161 0.057 0.101 0.016 0.410 0.012 0.034 0.004 0.004 0.034 0.071 0.066 0.003 0.015 0.004 5 K 0.004 0.021 0.008 0.045 0.003 0.078 0.004 0.017 0.011 0.008 0.696 0.034 0.052 0.003 0.003 0.012 6 D 0.028 0.590 0.080 0.060 0.001 0.003 0.002 0.001 0.014 0.001 0.004 0.159 0.021 0.001 0.012 0.022 7 M 0.033 0.008 0.603 0.272 0.001 0.003 0.001 0.001 0.001 0.002 0.002 0.003 0.037 0.001 0.002 0.033 8 T 0.002 0.001 0.022 0.004 0.001 0.948 0.001 0.001 0.001 0.001 0.002 0.001 0.018 0.001 0.001 0.001 9 F 0.001 0.004 0.001 0.001 0.001 0.045 0.001 0.001 0.001 0.001 0.930 0.004 0.017 0.001 0.001 0.001 10 A 0.001 0.007 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.970 0.016 0.001 0.001 0.001 11 Q 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.989 0.001 0.001 0.001 12 A 0.001 0.001 0.012 0.001 0.001 0.002 0.008 0.001 0.001 0.001 0.003 0.006 0.951 0.005 0.001 0.010 13 L 0.001 0.002 0.005 0.008 0.001 0.002 0.007 0.001 0.001 0.001 0.004 0.011 0.943 0.003 0.011 0.003 14 Q 0.001 0.004 0.016 0.008 0.001 0.006 0.018 0.001 0.001 0.001 0.002 0.003 0.779 0.041 0.005 0.113 15 T 0.024 0.068 0.147 0.092 0.001 0.003 0.009 0.004 0.001 0.001 0.005 0.005 0.414 0.010 0.072 0.144 16 H 0.006 0.002 0.100 0.005 0.012 0.283 0.110 0.001 0.001 0.006 0.006 0.008 0.418 0.015 0.003 0.023 17 P 0.006 0.030 0.010 0.003 0.001 0.024 0.001 0.012 0.001 0.001 0.664 0.011 0.230 0.001 0.005 0.002 18 G 0.001 0.027 0.002 0.007 0.001 0.009 0.001 0.001 0.010 0.002 0.025 0.825 0.086 0.001 0.001 0.005 19 V 0.009 0.003 0.016 0.005 0.001 0.007 0.007 0.001 0.001 0.001 0.037 0.059 0.849 0.001 0.002 0.002 20 A 0.001 0.003 0.027 0.006 0.001 0.015 0.002 0.002 0.001 0.001 0.029 0.060 0.851 0.001 0.003 0.001 21 G 0.001 0.004 0.002 0.016 0.001 0.005 0.001 0.001 0.001 0.001 0.014 0.026 0.930 0.001 0.001 0.002 22 V 0.001 0.003 0.001 0.020 0.001 0.010 0.002 0.001 0.001 0.001 0.003 0.040 0.918 0.001 0.001 0.002 23 L 0.001 0.003 0.016 0.026 0.001 0.005 0.006 0.001 0.001 0.001 0.003 0.006 0.926 0.003 0.002 0.003 24 R 0.001 0.006 0.007 0.019 0.001 0.008 0.003 0.001 0.001 0.001 0.003 0.005 0.940 0.001 0.003 0.004 25 S 0.001 0.001 0.002 0.008 0.030 0.003 0.044 0.001 0.001 0.001 0.004 0.001 0.113 0.776 0.002 0.012 26 Y 0.001 0.005 0.017 0.007 0.001 0.002 0.005 0.051 0.001 0.001 0.004 0.003 0.111 0.003 0.787 0.003 27 N 0.002 0.006 0.013 0.006 0.014 0.006 0.044 0.002 0.050 0.045 0.009 0.005 0.100 0.115 0.003 0.580 28 L 0.633 0.018 0.022 0.027 0.004 0.006 0.018 0.039 0.003 0.001 0.016 0.023 0.089 0.007 0.085 0.009 29 G 0.012 0.081 0.264 0.052 0.006 0.058 0.012 0.016 0.058 0.062 0.016 0.035 0.136 0.007 0.016 0.169 30 C 0.136 0.020 0.036 0.064 0.171 0.092 0.198 0.005 0.006 0.010 0.063 0.041 0.088 0.054 0.005 0.011 31 I 0.013 0.118 0.115 0.090 0.012 0.035 0.009 0.269 0.006 0.002 0.092 0.063 0.065 0.005 0.096 0.008 32 G 0.011 0.057 0.083 0.219 0.006 0.017 0.006 0.010 0.202 0.098 0.012 0.061 0.063 0.004 0.007 0.144 33 C 0.255 0.013 0.067 0.085 0.064 0.148 0.094 0.004 0.005 0.010 0.028 0.048 0.155 0.013 0.004 0.008 34 M 0.012 0.082 0.121 0.073 0.006 0.083 0.006 0.140 0.004 0.003 0.250 0.044 0.135 0.004 0.028 0.011 35 G 0.013 0.054 0.028 0.165 0.010 0.041 0.008 0.006 0.068 0.031 0.064 0.337 0.130 0.007 0.005 0.032 36 A 0.075 0.026 0.074 0.080 0.033 0.072 0.060 0.006 0.003 0.004 0.049 0.118 0.356 0.018 0.011 0.014 37 Q 0.007 0.043 0.077 0.048 0.002 0.095 0.005 0.054 0.003 0.003 0.128 0.085 0.388 0.002 0.040 0.020 38 N 0.014 0.046 0.026 0.042 0.002 0.075 0.006 0.002 0.022 0.010 0.086 0.140 0.475 0.003 0.003 0.048 39 E 0.065 0.062 0.079 0.096 0.001 0.010 0.002 0.003 0.001 0.001 0.051 0.145 0.470 0.001 0.006 0.008 40 S 0.001 0.001 0.006 0.004 0.001 0.383 0.001 0.001 0.001 0.001 0.006 0.056 0.539 0.001 0.001 0.002 41 L 0.001 0.001 0.001 0.001 0.001 0.015 0.001 0.001 0.001 0.001 0.314 0.014 0.654 0.001 0.001 0.001 42 E 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.541 0.442 0.001 0.001 0.001 43 Q 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.993 0.001 0.001 0.001 44 G 0.001 0.001 0.004 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.002 0.979 0.001 0.001 0.008 45 A 0.001 0.001 0.003 0.002 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.002 0.983 0.001 0.001 0.002 46 N 0.001 0.003 0.005 0.006 0.002 0.005 0.006 0.001 0.001 0.001 0.003 0.006 0.940 0.014 0.002 0.008 47 A 0.001 0.001 0.001 0.001 0.006 0.001 0.024 0.001 0.001 0.001 0.001 0.001 0.005 0.962 0.001 0.001 48 H 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.021 0.001 0.001 0.001 0.001 0.004 0.001 0.969 0.001 49 G 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.032 0.007 0.001 0.001 0.004 0.001 0.001 0.951 50 L 0.967 0.003 0.019 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 51 N 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 52 V 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 53 E 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 54 D 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.995 0.001 0.001 0.001 55 I 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.996 0.001 0.001 0.001 56 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.996 0.001 0.001 0.001 57 R 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.997 0.001 0.001 0.001 58 D 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.927 0.052 0.001 0.018 59 L 0.001 0.001 0.004 0.001 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.947 0.016 0.020 0.003 60 N 0.001 0.001 0.003 0.001 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.944 0.010 0.009 0.024 61 A 0.011 0.003 0.009 0.002 0.001 0.001 0.024 0.001 0.002 0.001 0.002 0.003 0.485 0.259 0.016 0.184 62 L 0.007 0.005 0.101 0.002 0.006 0.006 0.320 0.001 0.001 0.001 0.006 0.004 0.326 0.101 0.088 0.027 63 A 0.007 0.041 0.157 0.008 0.006 0.016 0.108 0.046 0.002 0.002 0.028 0.010 0.246 0.049 0.177 0.097