# TARGET TR469 # Using neural net dunbrack-40pc-3157-t06-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment TR469.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 20.0325 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 Q 0.179 0.185 0.264 0.123 0.067 0.047 0.080 0.018 0.027 0.007 0.002 2 K 0.154 0.376 0.280 0.060 0.045 0.036 0.017 0.002 0.028 0.001 0.001 3 F 0.103 0.339 0.366 0.073 0.018 0.067 0.005 0.001 0.027 0.001 0.001 4 T 0.121 0.226 0.390 0.081 0.063 0.065 0.012 0.001 0.036 0.005 0.002 5 K 0.671 0.052 0.128 0.060 0.033 0.019 0.014 0.006 0.004 0.009 0.003 6 D 0.305 0.083 0.122 0.289 0.028 0.039 0.093 0.006 0.029 0.002 0.002 7 M 0.274 0.214 0.227 0.110 0.075 0.030 0.033 0.013 0.018 0.005 0.001 8 T 0.318 0.247 0.315 0.026 0.025 0.054 0.002 0.001 0.012 0.001 0.001 9 F 0.883 0.036 0.041 0.012 0.007 0.016 0.001 0.001 0.003 0.001 0.001 10 A 0.961 0.008 0.011 0.010 0.004 0.004 0.001 0.001 0.001 0.001 0.001 11 Q 0.966 0.008 0.006 0.010 0.004 0.005 0.001 0.001 0.001 0.001 0.001 12 A 0.969 0.012 0.008 0.005 0.001 0.003 0.001 0.001 0.001 0.001 0.001 13 L 0.970 0.007 0.005 0.010 0.001 0.004 0.001 0.001 0.002 0.001 0.001 14 Q 0.912 0.006 0.008 0.056 0.002 0.010 0.004 0.001 0.002 0.001 0.001 15 T 0.713 0.012 0.014 0.245 0.002 0.006 0.006 0.001 0.002 0.001 0.001 16 H 0.072 0.048 0.123 0.016 0.011 0.024 0.016 0.001 0.690 0.001 0.001 17 P 0.815 0.001 0.150 0.025 0.001 0.002 0.002 0.001 0.001 0.001 0.006 18 G 0.781 0.003 0.016 0.064 0.009 0.003 0.013 0.105 0.001 0.005 0.001 19 V 0.863 0.015 0.052 0.054 0.002 0.009 0.001 0.001 0.003 0.001 0.001 20 A 0.957 0.007 0.014 0.015 0.002 0.003 0.002 0.001 0.001 0.001 0.001 21 G 0.971 0.005 0.009 0.005 0.006 0.003 0.001 0.001 0.001 0.001 0.001 22 V 0.970 0.009 0.005 0.005 0.001 0.006 0.001 0.001 0.003 0.001 0.001 23 L 0.930 0.011 0.013 0.018 0.001 0.016 0.001 0.001 0.009 0.001 0.001 24 R 0.925 0.008 0.011 0.044 0.001 0.007 0.002 0.001 0.001 0.001 0.001 25 S 0.782 0.017 0.015 0.157 0.004 0.010 0.010 0.001 0.003 0.001 0.001 26 Y 0.379 0.027 0.034 0.505 0.008 0.005 0.033 0.002 0.005 0.001 0.001 27 N 0.052 0.011 0.025 0.191 0.016 0.022 0.612 0.053 0.010 0.007 0.001 28 L 0.185 0.166 0.257 0.327 0.019 0.016 0.020 0.001 0.008 0.001 0.001 29 G 0.198 0.039 0.160 0.058 0.145 0.020 0.040 0.092 0.008 0.241 0.001 30 C 0.257 0.166 0.274 0.112 0.087 0.055 0.012 0.003 0.022 0.011 0.001 31 I 0.326 0.177 0.202 0.165 0.050 0.036 0.023 0.001 0.015 0.004 0.002 32 G 0.139 0.027 0.090 0.034 0.162 0.014 0.039 0.188 0.007 0.299 0.001 33 C 0.255 0.161 0.325 0.084 0.070 0.048 0.015 0.002 0.033 0.006 0.001 34 M 0.434 0.059 0.242 0.142 0.022 0.044 0.029 0.003 0.016 0.004 0.005 35 G 0.424 0.045 0.081 0.079 0.097 0.018 0.043 0.108 0.006 0.099 0.001 36 A 0.432 0.089 0.139 0.204 0.046 0.049 0.020 0.003 0.012 0.004 0.001 37 Q 0.470 0.074 0.103 0.225 0.036 0.022 0.049 0.005 0.009 0.006 0.001 38 N 0.333 0.081 0.108 0.175 0.067 0.044 0.142 0.026 0.017 0.007 0.001 39 E 0.352 0.198 0.286 0.093 0.021 0.034 0.004 0.001 0.011 0.001 0.001 40 S 0.413 0.150 0.235 0.034 0.051 0.089 0.003 0.001 0.022 0.001 0.001 41 L 0.981 0.003 0.008 0.004 0.002 0.002 0.001 0.001 0.001 0.001 0.001 42 E 0.991 0.001 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 43 Q 0.970 0.002 0.002 0.022 0.001 0.002 0.001 0.001 0.001 0.001 0.001 44 G 0.983 0.002 0.002 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 45 A 0.965 0.004 0.007 0.014 0.002 0.004 0.002 0.001 0.002 0.001 0.001 46 N 0.930 0.005 0.010 0.039 0.001 0.008 0.004 0.001 0.002 0.001 0.001 47 A 0.808 0.006 0.012 0.162 0.001 0.005 0.003 0.001 0.001 0.001 0.001 48 H 0.213 0.013 0.039 0.684 0.005 0.003 0.038 0.002 0.002 0.001 0.001 49 G 0.031 0.003 0.012 0.025 0.033 0.005 0.443 0.371 0.002 0.074 0.001 50 L 0.110 0.284 0.443 0.125 0.013 0.013 0.002 0.001 0.010 0.001 0.001 51 N 0.039 0.058 0.594 0.025 0.027 0.189 0.008 0.001 0.055 0.003 0.001 52 V 0.961 0.002 0.026 0.004 0.001 0.003 0.001 0.001 0.001 0.001 0.002 53 E 0.994 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 54 D 0.986 0.001 0.002 0.007 0.001 0.002 0.001 0.001 0.001 0.001 0.001 55 I 0.993 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 56 L 0.996 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 57 R 0.975 0.001 0.002 0.020 0.001 0.001 0.001 0.001 0.001 0.001 0.001 58 D 0.931 0.003 0.002 0.061 0.001 0.001 0.001 0.001 0.001 0.001 0.001 59 L 0.884 0.010 0.025 0.068 0.001 0.003 0.003 0.001 0.006 0.001 0.001 60 N 0.896 0.004 0.029 0.039 0.002 0.006 0.021 0.001 0.002 0.001 0.001 61 A 0.787 0.014 0.027 0.140 0.003 0.011 0.010 0.004 0.002 0.001 0.001 62 L 0.507 0.035 0.158 0.267 0.005 0.012 0.006 0.001 0.009 0.001 0.001 63 A 0.491 0.039 0.151 0.134 0.032 0.019 0.093 0.018 0.011 0.012 0.001