# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.1570	a.248.1.1	133507
1w9iA	770	7.027		
1w7jA	795	9.314	b.34.3.1,c.37.1.9	120688,120689
2v26A	784	11.26		
1y6uA	70	13.43		
1u3eM	174	13.73	d.4.1.3,d.285.1.1	107640,107641
2bkhA	814	21.60		
1gbs	185	22.59		
2d5rB	116	23.87		
2nxoA	291	25.30		
2al3A	90	37.90	d.15.1.2	126957
2b5aA	77	44.03	a.35.1.3	127882
1fe0A	68	47.22	d.58.17.1	39345
1rp3A	239	48.32	a.4.13.1,a.4.13.2,a.177.1.1	97678,97679,97680
2cx5A	158	48.43		
2uwxA	494	50.86	e.3.1.1	140002
2ouwA	138	52.56		
2oap1	511	53.46		
2feaA	236	55.17	c.108.1.20	133327
2hinA	71	55.73		
2gwfB	134	55.91		
1gbsA	185	57.48	d.2.1.5	36986
2j01U	118	57.97		
2z0xA	158	58.26		
1wdvA	152	58.70	d.116.1.1	114539
1fipA	98	59.12	a.4.1.12	18980
2z15A	130	60.33		
2cobA	70	64.10	a.4.1.15	130673
2oa4A	101	64.16		
2cfmA	561	65.51		
2zfoB	142	65.75		
1ubkS	267	67.41	e.19.1.1	88423
1xb4A	202	69.63	a.4.5.54,a.4.5.54	121832,121833
1qw1A	121	69.73		
2cvhA	220	73.04		
2pgfA	371	75.99		
1x9fB	145	81.50	a.1.1.2	114984
1sur	215	81.81		
2qnuA	226	83.90		
1chuA	540	86.05	a.7.3.1,c.3.1.4,d.168.1.1	16325,30424,42307
3c8yA	574	86.26		
1m1qA	91	87.45	a.138.1.3	74419
2vl6A	268	88.94		
1aorA	605	89.76	a.110.1.1,d.152.1.1	19042,41794