# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.1164	a.248.1.1	133507
1w9iA	770	3.300		
1y6uA	70	8.763		
2v26A	784	9.369		
1w7jA	795	12.51	b.34.3.1,c.37.1.9	120688,120689
2gwfB	134	17.05		
2bkhA	814	17.50		
2nxoA	291	20.56		
1u3eM	174	21.20	d.4.1.3,d.285.1.1	107640,107641
2d5rB	116	22.33		
1ae7A	119	22.66	a.133.1.2	19553
2qnuA	226	24.75		
2j01U	118	27.73		
2v9cA	215	29.01		
1qw1A	121	35.03		
1gbs	185	37.59		
1xb4A	202	40.58	a.4.5.54,a.4.5.54	121832,121833
2al3A	90	43.75	d.15.1.2	126957
2feaA	236	44.38	c.108.1.20	133327
2ogbA	126	46.41		
2fzpA	144	48.97		
1ogiA	303	52.86	b.43.4.2,c.25.1.1	92914,92915
2z15A	130	54.34		
2cvhA	220	55.26		
2vl6A	268	58.13		
2ghjA	118	58.94		
1fe0A	68	60.17	d.58.17.1	39345
1sur	215	61.09		
2nsvA	52	61.11		
2oa4A	101	61.70		
2qipA	165	63.58		
1m1qA	91	64.68	a.138.1.3	74419
2oy9A	98	67.28		
1ubkS	267	68.79	e.19.1.1	88423
2pgfA	371	70.76		
1vcsA	102	71.58	a.47.2.1	119985
1zupA	315	74.53	c.55.3.11	125681
1aorA	605	75.48	a.110.1.1,d.152.1.1	19042,41794
1jpyA	137	77.55	g.17.1.6	67065
1n28A	124	77.73	a.133.1.2	91550
2zfoB	142	77.76		
1g4iA	123	78.86	a.133.1.2	60241
2ouwA	138	79.21		
1yhuB	144	79.80		
1vflA	356	82.01	c.1.9.1	120041
1x9fB	145	84.58	a.1.1.2	114984
1vk3A	615	85.72	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	100846,100847,100848,100849
1ik9A	213	86.15	b.59.1.1,h.1.11.1	66176,66177
2b5aA	77	86.97	a.35.1.3	127882
2de3A	365	87.02