# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.04472	a.248.1.1	133507
1w9iA	770	2.888		
2v26A	784	6.320		
1w7jA	795	9.687	b.34.3.1,c.37.1.9	120688,120689
2d5rB	116	9.97		
1u3eM	174	10.27	d.4.1.3,d.285.1.1	107640,107641
1qw1A	121	11.87		
2bkhA	814	13.38		
2j01U	118	16.63		
1gbs	185	23.23		
1y6uA	70	23.26		
2cfmA	561	23.37		
2cobA	70	25.16	a.4.1.15	130673
2al3A	90	25.67	d.15.1.2	126957
2ghjA	118	25.95		
2z15A	130	27.18		
2pgfA	371	27.62		
2oy9A	98	29.00		
1xb4A	202	34.18	a.4.5.54,a.4.5.54	121832,121833
2ouwA	138	36.56		
2i9uA	439	37.06		
2gokA	429	41.51		
2b5aA	77	42.44	a.35.1.3	127882
1vflA	356	43.97	c.1.9.1	120041
2gwfB	134	44.37		
1ubkS	267	44.81	e.19.1.1	88423
2nsaA	170	45.24		
3c6fA	153	46.40		
1mp9A	198	48.62	d.129.1.1,d.129.1.1	91385,91386
1wdvA	152	49.07	d.116.1.1	114539
2cx5A	158	49.96		
2imrA	420	50.00		
1s6lA	212	50.20		
2vl6A	268	53.00		
1ogiA	303	54.14	b.43.4.2,c.25.1.1	92914,92915
1rp3A	239	54.45	a.4.13.1,a.4.13.2,a.177.1.1	97678,97679,97680
1fipA	98	54.72	a.4.1.12	18980
2amxA	376	56.49	c.1.9.1	127024
1aorA	605	57.31	a.110.1.1,d.152.1.1	19042,41794
2z0xA	158	59.57		
2zc3A	168	61.53		
2cwcA	303	66.44		
1sur	215	68.24		
1wi9A	72	68.79	a.4.5.47	114663
2de3A	365	69.60		
1yhuB	144	70.57		
1x9fB	145	70.68	a.1.1.2	114984
2nxoA	291	72.70		
2zfoB	142	75.66		
2z2mA	168	75.79		
1tw3A	360	75.96	a.4.5.29,c.66.1.12	107373,107374
4uagA	437	76.58	c.5.1.1,c.59.1.1,c.72.2.1	30651,33952,34955
2hinA	71	78.60		
2hp0A	466	81.92		
2aorA	223	84.31		
2q0tA	263	85.10		
1e8cA	498	86.59	c.98.1.1,c.59.1.1,c.72.2.1	59377,59378,59379
1wgnA	63	88.04	a.5.2.1	114617
1tz9A	367	88.64	c.1.15.6	107466
3c8pA	46	89.63