# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.5068	a.248.1.1	133507
1w9iA	770	10.42		
2v26A	784	19.72		
1y6uA	70	22.44		
2d5rB	116	26.42		
1w7jA	795	28.51	b.34.3.1,c.37.1.9	120688,120689
1gbs	185	32.46		
2gwfB	134	36.88		
2bkhA	814	39.20		
1u3eM	174	39.66	d.4.1.3,d.285.1.1	107640,107641
2feaA	236	42.63	c.108.1.20	133327
2qnuA	226	44.26		
1fe0A	68	44.47	d.58.17.1	39345
2nxoA	291	45.91		
2b5aA	77	47.24	a.35.1.3	127882
2uwxA	494	48.39	e.3.1.1	140002
2v9cA	215	50.79		
1vk3A	615	57.41	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	100846,100847,100848,100849
1jpyA	137	57.51	g.17.1.6	67065
1qw1A	121	58.83		
1gbsA	185	59.02	d.2.1.5	36986
1aorA	605	69.62	a.110.1.1,d.152.1.1	19042,41794
1ae7A	119	70.13	a.133.1.2	19553
2oap1	511	74.83		
1sur	215	77.50		
2pgfA	371	78.14		
2ezhA	75	78.28	a.4.1.2	16029
2qipA	165	89.87