# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fi0A 81 0.006270 a.248.1.1 133507 2pgfA 371 0.4159 1ae7A 119 1.392 a.133.1.2 19553 2rfmA 192 2.687 1m1nA 491 4.656 c.92.2.3 78417 1tcaA 317 5.054 c.69.1.17 34726 2d5rB 116 5.770 2jabA 136 5.799 2feaA 236 5.914 c.108.1.20 133327 2zfoB 142 6.211 2obwA 258 8.327 1nrfA 262 9.735 e.3.1.1 92086 1xrsA 516 10.28 c.1.19.4 115883 2qezA 455 11.62 1mb3A 124 11.69 c.23.1.1 78907 1a2aA 122 11.72 a.133.1.2 19540 1mc2A 122 11.80 a.133.1.2 74622 1p2fA 220 13.56 a.4.6.1,c.23.1.1 87720,87721 1ogiA 303 14.10 b.43.4.2,c.25.1.1 92914,92915 2jhnA 295 14.89 1w9iA 770 15.50 2vl6A 268 15.67 1ujnA 348 15.94 e.22.1.1 99460 1u3eM 174 16.16 d.4.1.3,d.285.1.1 107640,107641 1jltB 122 16.69 a.133.1.2 66868 7aatA 401 16.80 c.67.1.1 34250 1g4iA 123 17.88 a.133.1.2 60241 1yxlA 119 18.45 a.133.1.2 124191 1bio 228 18.75 1n0qA 93 18.79 k.37.1.1 79754 1s6bB 119 19.03 a.133.1.2 98593 1vflA 356 19.17 c.1.9.1 120041 2zfoA 140 19.72 1p1xA 260 19.77 c.1.10.1 104060 1s8iA 121 19.85 a.133.1.2 98735 1s6bA 119 19.87 a.133.1.2 98592 1bd8A 156 19.95 d.211.1.1 19157 1wxxA 382 20.33 b.122.1.9,c.66.1.51 121418,121419 2al3A 90 20.86 d.15.1.2 126957 1y6uA 70 22.37 2d2mC 147 22.48 2f8yA 223 22.77 1bif 469 25.71 1z9nA 177 26.12 2z15A 130 26.92 1thgA 544 27.62 c.69.1.17 34763 1di1A 300 27.84 a.128.1.4 19446 3c5rA 137 29.27 1bifA 469 29.28 c.37.1.7,c.60.1.4 31961,34003 1oy3D 282 29.77 d.211.1.1 87554 1z9pA 155 30.34 1dgfA 497 30.62 e.5.1.1 42782 1abbA 828 30.62 c.87.1.4 35536 1xngA 268 33.21 c.26.2.1 122186 1r1hA 696 33.39 d.92.1.4 104756 2yrrA 353 33.63 2r6fA 972 34.09 2d74B 148 34.27 1ars 396 35.56 2dgkA 452 36.84 1wmhA 89 37.04 d.15.2.2 114744 1oqsB 122 39.65 a.133.1.2 93428 2vgeA 229 41.00 1m7sA 484 41.47 e.5.1.1 74574 2b5aA 77 41.96 a.35.1.3 127882 1gvzA 237 42.32 b.47.1.2 76360 2g3fA 421 42.69 2g5gX 268 48.64 1vqrA 297 48.83 a.211.1.3 114015 1fe0A 68 49.17 d.58.17.1 39345 2basA 431 49.92 c.1.33.1,d.110.6.2 128244,128245 1zlbA 122 50.82 a.133.1.2 125248 2pgd 482 51.43 2z0xA 158 52.61 1qhoA 686 53.89 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 2cxaA 256 55.70 d.108.1.6 130993 1peqA 714 56.49 a.98.1.1,c.7.1.2 104131,104132 1jpyA 137 58.16 g.17.1.6 67065 1sur 215 59.07 1y4lA 121 60.30 a.133.1.2 122624 2asuB 234 60.36 1m1qA 91 60.69 a.138.1.3 74419 2gwfB 134 61.08 1xsfA 108 61.84 1iow 306 65.22 1pyoA 167 65.63 c.17.1.1 95370 2chuA 296 66.42 c.92.2.4 130485 1n93X 375 67.02 a.206.1.1 91707 2i9uA 439 67.57 1qw1A 121 68.80 2cvhA 220 69.07 1bd8 156 69.23 2zivB 351 70.16 2bkwA 385 70.70 c.67.1.3 128714 2qm8A 337 71.26 2prrA 197 73.38 2ouwA 138 74.72 1j8fA 323 75.14 c.31.1.5 62738 2v9cA 215 76.44 1u6tA 121 77.79 1bioA 228 78.41 b.47.1.2 26314 1cl8A 276 79.56 c.52.1.1 33230 1nnwA 252 80.01 d.159.1.5 80674 2iufA 688 80.48 2zfoC 147 80.69 2ovsA 118 80.92 1x9fB 145 81.27 a.1.1.2 114984 2hlkA 255 81.48 1eca 136 82.04 1gctA 245 82.89 b.47.1.2 26021 1u55A 188 83.18 d.278.1.1 107677 1qhlA 227 85.45 c.37.1.12 32382 2nsvA 52 85.57 1ez4A 318 86.01 c.2.1.5,d.162.1.1 64917,64918 1io2A 213 87.01 c.55.3.1 62612 1chuA 540 87.46 a.7.3.1,c.3.1.4,d.168.1.1 16325,30424,42307 1wdvA 152 88.08 d.116.1.1 114539 1vapA 123 88.28 a.133.1.2 19548 3bq5A 766 89.58 1fipA 98 89.88 a.4.1.12 18980