# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.6173	a.248.1.1	133507
1w9iA	770	6.839		
2v26A	784	13.49		
1w7jA	795	20.75	b.34.3.1,c.37.1.9	120688,120689
2bkhA	814	24.61		
1y6uA	70	28.80		
1u3eM	174	33.90	d.4.1.3,d.285.1.1	107640,107641
1ae7A	119	35.60	a.133.1.2	19553
2d5rB	116	46.18		
2gwfB	134	55.08		
1gbs	185	58.27		
2al3A	90	59.44	d.15.1.2	126957
2feaA	236	59.75	c.108.1.20	133327
1ogiA	303	62.89	b.43.4.2,c.25.1.1	92914,92915
3c8yA	574	63.11		
1pq7A	224	64.09	b.47.1.2	95002
2oap1	511	72.48		
2cvhA	220	73.13		
1qw1A	121	80.66		
1g38A	393	84.30	c.66.1.27,d.287.1.1	111567,111568
1aorA	605	84.86	a.110.1.1,d.152.1.1	19042,41794
1jpyA	137	85.50	g.17.1.6	67065
2b5aA	77	86.58	a.35.1.3	127882
2z15A	130	86.76