# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.4252	a.248.1.1	133507
1w9iA	770	5.908		
2gwfB	134	16.28		
1y6uA	70	17.57		
1ae7A	119	22.14	a.133.1.2	19553
1w7jA	795	23.22	b.34.3.1,c.37.1.9	120688,120689
2v26A	784	27.08		
1qw1A	121	27.96		
2nxoA	291	29.62		
1u3eM	174	35.49	d.4.1.3,d.285.1.1	107640,107641
2ogbA	126	38.29		
2v9cA	215	40.06		
1vk3A	615	42.62	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	100846,100847,100848,100849
2bkhA	814	43.84		
2fzpA	144	45.00		
1pq7A	224	47.96	b.47.1.2	95002
2al3A	90	56.83	d.15.1.2	126957
1ogiA	303	58.11	b.43.4.2,c.25.1.1	92914,92915
1gbs	185	60.22		
1xb4A	202	60.72	a.4.5.54,a.4.5.54	121832,121833
2nsvA	52	62.57		
1fe0A	68	63.61	d.58.17.1	39345
2qnuA	226	65.37		
1sur	215	65.39		
2j01U	118	66.82		
2feaA	236	70.47	c.108.1.20	133327
1jpyA	137	71.40	g.17.1.6	67065
2rc5A	314	71.84		
1ubkS	267	81.19	e.19.1.1	88423
2zfoB	142	81.61		
1gyoA	109	81.76	a.138.1.1	70763
1g38A	393	82.06	c.66.1.27,d.287.1.1	111567,111568
3c8yA	574	83.03		
1ik9A	213	84.33	b.59.1.1,h.1.11.1	66176,66177
1yhuB	144	87.31		
2oy9A	98	87.95