# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.1822	a.248.1.1	133507
1w9iA	770	5.162		
2v26A	784	11.76		
1w7jA	795	11.76	b.34.3.1,c.37.1.9	120688,120689
1y6uA	70	21.15		
2gwfB	134	21.76		
2nxoA	291	21.97		
1u3eM	174	22.20	d.4.1.3,d.285.1.1	107640,107641
2bkhA	814	23.24		
1ae7A	119	25.17	a.133.1.2	19553
1qw1A	121	27.56		
1gbs	185	36.16		
2ogbA	126	45.83		
1xb4A	202	46.14	a.4.5.54,a.4.5.54	121832,121833
2j01U	118	48.01		
1aorA	605	49.08	a.110.1.1,d.152.1.1	19042,41794
2fzpA	144	49.53		
1sur	215	52.02		
2al3A	90	54.87	d.15.1.2	126957
1ubkS	267	55.23	e.19.1.1	88423
2zfoB	142	57.01		
2v9cA	215	60.32		
2oy9A	98	61.14		
2ouwA	138	63.34		
2feaA	236	64.30	c.108.1.20	133327
1x9fB	145	65.74	a.1.1.2	114984
1ogiA	303	66.78	b.43.4.2,c.25.1.1	92914,92915
2de3A	365	66.99		
2pgfA	371	67.73		
1gyoA	109	70.71	a.138.1.1	70763
1yhuB	144	73.12		
1n28A	124	73.51	a.133.1.2	91550
3c8yA	574	75.09		
2cvhA	220	75.23		
2zfoC	147	75.71		
1vcsA	102	76.52	a.47.2.1	119985
1ecaA	136	78.46	a.1.1.2	15209
2nsvA	52	80.14		
1ik9A	213	82.27	b.59.1.1,h.1.11.1	66176,66177
1m1qA	91	83.38	a.138.1.3	74419
2yztA	67	85.04		
1mp9A	198	85.27	d.129.1.1,d.129.1.1	91385,91386
1vflA	356	85.57	c.1.9.1	120041
1fe0A	68	86.20	d.58.17.1	39345
1g4iA	123	86.62	a.133.1.2	60241
2oa4A	101	88.11		
2vl6A	268	88.22		
1pq7A	224	88.35	b.47.1.2	95002