# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.1798	a.248.1.1	133507
1w9iA	770	3.283		
2v26A	784	8.161		
1w7jA	795	11.42	b.34.3.1,c.37.1.9	120688,120689
2bkhA	814	15.84		
1y6uA	70	16.71		
2nxoA	291	19.79		
1u3eM	174	24.05	d.4.1.3,d.285.1.1	107640,107641
2d5rB	116	25.24		
1fe0A	68	26.07	d.58.17.1	39345
1gbs	185	29.41		
2j01U	118	29.62		
2gwfB	134	32.68		
2al3A	90	35.95	d.15.1.2	126957
1ae7A	119	39.24	a.133.1.2	19553
1qw1A	121	39.36		
1xb4A	202	48.77	a.4.5.54,a.4.5.54	121832,121833
1aorA	605	55.29	a.110.1.1,d.152.1.1	19042,41794
1jpyA	137	55.79	g.17.1.6	67065
1ubkS	267	55.84	e.19.1.1	88423
1ogiA	303	60.38	b.43.4.2,c.25.1.1	92914,92915
2feaA	236	61.54	c.108.1.20	133327
2cvhA	220	62.00		
2pgfA	371	63.32		
2ogbA	126	63.65		
1sur	215	64.11		
2zfoB	142	65.33		
2z15A	130	65.36		
2eqpA	50	65.69		
1yhuB	144	65.84		
2oy9A	98	67.61		
2fzpA	144	69.00		
2oap1	511	70.04		
1p1xA	260	70.43	c.1.10.1	104060
1x9fB	145	71.43	a.1.1.2	114984
2nsvA	52	73.75		
2v9cA	215	76.68		
2ghjA	118	76.92		
2uwxA	494	82.52	e.3.1.1	140002
2qnuA	226	83.58		
1vehA	92	84.02	d.52.8.1	113635
1ecaA	136	86.39	a.1.1.2	15209
1h21A	247	87.03	a.138.1.3	76510
2ouwA	138	88.49		
1vflA	356	88.84	c.1.9.1	120041
1m1qA	91	89.79	a.138.1.3	74419