# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.4084	a.248.1.1	133507
1ogiA	303	9.658	b.43.4.2,c.25.1.1	92914,92915
2d5rB	116	21.17		
1fndA	314	23.92	b.43.4.2,c.25.1.1	25626,31516
2j01U	118	27.32		
1ae7A	119	33.53	a.133.1.2	19553
2qnuA	226	35.08		
2z15A	130	36.15		
2bmwA	304	38.66	b.43.4.2,c.25.1.1	128815,128816
1fehA	574	39.49	c.96.1.1,d.15.4.2,d.58.1.5	36015,37690,38998
1y6uA	70	39.64		
2gwfB	134	40.66		
1vffA	423	43.47	c.1.8.4	120033
1fe0A	68	43.70	d.58.17.1	39345
1w9iA	770	50.14		
1u3eM	174	53.66	d.4.1.3,d.285.1.1	107640,107641
2ghjA	118	55.41		
2pgfA	371	57.62		
1aorA	605	59.84	a.110.1.1,d.152.1.1	19042,41794
2rc5A	314	60.18		
3c8yA	574	63.51		
1cbgA	490	68.24	c.1.8.4	28933
2gokA	429	68.95		
2fzpA	144	69.55		
1qw1A	121	70.40		
1geqA	248	77.79	c.1.2.4	28589
2ogbA	126	79.83		
2oy9A	98	81.27		
1w7jA	795	81.29	b.34.3.1,c.37.1.9	120688,120689
1bio	228	86.01		
2pytA	133	88.16