# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.1304	a.248.1.1	133507
1ogiA	303	4.494	b.43.4.2,c.25.1.1	92914,92915
1fndA	314	10.45	b.43.4.2,c.25.1.1	25626,31516
1qw1A	121	10.84		
2rc5A	314	13.67		
1y6uA	70	15.17		
2bmwA	304	15.69	b.43.4.2,c.25.1.1	128815,128816
2nxoA	291	16.70		
1ae7A	119	18.41	a.133.1.2	19553
1vffA	423	21.56	c.1.8.4	120033
1w9iA	770	30.54		
1u3eM	174	31.67	d.4.1.3,d.285.1.1	107640,107641
2hc1A	291	32.99		
2pgfA	371	34.56		
2ok8A	316	34.98		
2o9pA	454	40.35		
1gyoA	109	41.22	a.138.1.1	70763
1n28A	124	41.66	a.133.1.2	91550
1w7jA	795	42.27	b.34.3.1,c.37.1.9	120688,120689
2ghjA	118	50.29		
2qnuA	226	51.31		
2i9uA	439	52.05		
2hbjA	410	53.22	a.60.8.4,c.55.3.5	136311,136312
2yztA	67	53.51		
2j01U	118	53.82		
2e4uA	555	57.33		
1vflA	356	57.49	c.1.9.1	120041
1vk3A	615	57.60	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	100846,100847,100848,100849
1jpyA	137	59.91	g.17.1.6	67065
1vapA	123	60.72	a.133.1.2	19548
3dhpA	496	64.11		
1t0iA	191	64.38	c.23.5.4	106209
1aorA	605	64.46	a.110.1.1,d.152.1.1	19042,41794
2ib0A	170	69.06		
1pgyA	47	70.73	a.5.2.1	94696
1fehA	574	75.58	c.96.1.1,d.15.4.2,d.58.1.5	36015,37690,38998
2qebA	145	76.88		
1chuA	540	77.45	a.7.3.1,c.3.1.4,d.168.1.1	16325,30424,42307
2v9cA	215	78.48		
1ypyA	184	80.33		
1a2aA	122	81.63	a.133.1.2	19540
1zupA	315	83.42	c.55.3.11	125681
2qipA	165	84.81		
2imrA	420	85.64		
1s8iA	121	86.46	a.133.1.2	98735
2pl2A	217	87.48		
1bywA	110	87.58	d.110.3.6	40912