# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fi0A 81 0.000186 a.248.1.1 133507 1ogiA 303 0.8562 b.43.4.2,c.25.1.1 92914,92915 2qnuA 226 1.353 1b4fA 82 2.239 a.60.1.2 17934 2j01U 118 2.705 2ooaA 52 2.978 1jb9A 316 4.043 b.43.4.2,c.25.1.1 62840,62841 2bmwA 304 4.109 b.43.4.2,c.25.1.1 128815,128816 1fs7A 485 4.648 a.138.1.3 19691 2dklA 85 4.779 a.5.2.1 131555 1bx1A 314 6.728 b.43.4.2,c.25.1.1 25629,31519 1k6kA 143 6.745 a.174.1.1 77274 1b0xA 94 7.127 a.60.1.2 17933 2eggA 297 7.605 1vekA 84 8.351 a.5.2.1 113636 2v26A 784 9.031 1v38A 78 9.079 a.60.1.2 100280 1w9iA 770 9.355 2f3nA 76 9.682 a.60.1.2 132885 1n0qA 93 10.65 k.37.1.1 79754 2bwbA 46 10.76 a.5.2.1 129329 3c7mA 195 10.80 2jabA 136 12.53 2in3A 216 14.62 1yzxA 226 15.69 2zfoC 147 16.17 1p90A 145 17.14 c.55.5.2 94377 2nvwA 479 18.88 c.2.1.3,d.81.1.5 138665,138666 1fndA 314 19.94 b.43.4.2,c.25.1.1 25626,31516 2bkhA 814 20.13 1pbjA 125 20.63 d.37.1.1,d.37.1.1 94414,94415 1dxsA 80 23.60 a.60.1.2 17944 1fipA 98 26.98 a.4.1.12 18980 1a8oA 70 27.04 a.28.3.1 16953 1zupA 315 27.32 c.55.3.11 125681 1q02A 52 29.25 a.5.2.1 95490 2o1sA 621 31.96 1nvtA 287 32.49 c.2.1.7,c.58.1.5 86270,86271 1dv0A 47 33.44 a.5.2.1 16289 2rc5A 314 34.37 2rfmA 192 34.54 1iqqA 200 34.69 d.124.1.1 66274 2d2mC 147 35.01 1bedA 181 35.69 c.47.1.13 90330 2jzdA 129 35.78 1y6uA 70 36.26 1vg5A 73 36.68 a.5.2.1 113640 1z96A 40 37.02 3c9pA 123 37.27 3cryA 188 37.45 1tueA 212 37.75 c.37.1.20 107323 3bciA 186 38.15 2d5cA 263 38.17 1zp4A 304 39.12 1a8o 70 39.44 1wi9A 72 39.97 a.4.5.47 114663 2gruA 368 40.84 2gcuA 245 40.91 2vpzA 765 41.94 3bwlA 126 42.00 1ccwA 137 42.86 c.23.6.1 31238 2r7aA 256 43.23 1oy3D 282 47.12 d.211.1.1 87554 3sdhA 146 47.33 a.1.1.2 14984 1rxdA 159 48.42 c.45.1.1 111959 2r0bA 154 49.01 1e8cA 498 49.44 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2oo9A 46 49.44 2d1pB 119 49.78 c.114.1.1 131137 2b3zA 373 50.67 c.71.1.2,c.97.1.2 127807,127808 1zkpA 268 50.85 d.157.1.9 125205 1wrjA 156 50.88 2ezhA 75 52.59 a.4.1.2 16029 1u4gA 301 53.10 d.92.1.2 107670 1jihA 531 55.83 d.240.1.1,e.8.1.7 90374,90375 1zelA 298 59.20 1g5tA 196 59.52 c.37.1.11 32366 3bnjA 485 59.58 2r5rA 271 60.66 2h5xA 196 61.58 1wgnA 63 62.87 a.5.2.1 114617 1pea 385 63.15 1x9fA 151 63.47 a.1.1.2 114983 2ppxA 99 63.68 2cobA 70 64.15 a.4.1.15 130673 2amjA 204 64.94 1s6lA 212 65.38 1u3eM 174 65.44 d.4.1.3,d.285.1.1 107640,107641 2cp8A 54 65.45 a.5.2.1 130695 1z0xA 220 66.20 a.4.1.9,a.121.1.1 124334,124335 2f2sA 406 66.28 2grrB 170 67.38 1ja1A 622 67.42 b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 2b5aA 77 67.45 a.35.1.3 127882 1pxvA 183 67.79 d.3.1.1 95301 2g0wA 296 70.07 c.1.15.4 134503 1zzoA 136 70.23 c.47.1.10 125913 1m7sA 484 70.36 e.5.1.1 74574 1y02A 120 70.68 a.140.2.1,g.50.1.1 116278,116279 2fr1A 486 71.09 c.2.1.2,c.2.1.2 133961,133962 1ixsA 62 72.58 a.5.1.1 76932 2qsfX 171 73.57 2esnA 310 74.21 a.4.5.37,c.94.1.1 132333,132334 2qezA 455 74.65 1mzhA 225 75.77 c.1.10.1 79698 2if5A 120 75.90 1i7kA 179 76.48 d.20.1.1 61889 2glxA 332 76.96 2j16A 182 77.83 2rdzA 452 79.53 1sctB 151 79.75 a.1.1.2 15003 1qgdA 662 79.79 c.36.1.6,c.36.1.10,c.48.1.1 88367,88368,88369 2xatA 212 81.26 b.81.1.3 28058 1s5uA 138 81.77 d.38.1.1 98573 3cswA 285 82.11 1ujcA 161 83.94 1w7jA 795 84.06 b.34.3.1,c.37.1.9 120688,120689 1ci4A 89 84.88 a.60.5.1 17970 2jgqA 233 87.09 2i57A 438 87.14 1jqlB 140 87.84 c.37.1.20 63234 2qhoB 53 88.47 1yqsA 349 89.26 e.3.1.1 123899 2hk9A 275 89.47 1bf6A 291 89.55 c.1.9.3 29065 2i5tA 188 89.73