Best Alignments for TR469

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2fi0A	7.5759e-02	2fi0A/TR469-2fi0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.248.1.1
1u3eM	1.5137e+01	1u3eM/TR469-1u3eM-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.4.1.3 d.285.1.1
1w7jA	2.0215e+01	1w7jA/TR469-1w7jA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.3.1 c.37.1.9
2bkhA	2.1718e+01	2bkhA/TR469-2bkhA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2akaA	2.4551e+01	2akaA/TR469-2akaA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1y6uA	2.7122e+01	1y6uA/TR469-1y6uA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ofyA	2.8919e+01	2ofyA/TR469-2ofyA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1d0yA	3.0276e+01	1d0yA/TR469-1d0yA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.3.1 c.37.1.9
1mvwA	3.1682e+01	1mvwA/TR469-1mvwA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	i.15.1.1
2d5rB	3.4756e+01	2d5rB/TR469-2d5rB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2gwfB	3.7849e+01	2gwfB/TR469-2gwfB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1w9iA	4.0167e+01	1w9iA/TR469-1w9iA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3c8yA	4.4649e+01	3c8yA/TR469-3c8yA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1s69A	4.5996e+01	1s69A/TR469-1s69A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.1.1.1
1y75B	4.9275e+01	1y75B/TR469-1y75B-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1f0nA	4.9761e+01	1f0nA/TR469-1f0nA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.69.1.3
2d2mA	5.1101e+01	2d2mA/TR469-2d2mA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1r9lA	5.3379e+01	1r9lA/TR469-1r9lA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.94.1.1
2v26A	5.4273e+01	2v26A/TR469-2v26A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2qnuA	5.4708e+01	2qnuA/TR469-2qnuA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001