# TARGET TR469 # Using neural net dunbrack-40pc-3157-t04-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment TR469.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 19.6664 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 Q 0.004 0.017 0.539 0.008 0.033 0.016 0.002 0.001 0.028 0.193 0.057 0.058 0.044 2 K 0.005 0.044 0.551 0.004 0.034 0.019 0.003 0.001 0.031 0.102 0.058 0.034 0.114 3 F 0.005 0.063 0.598 0.006 0.026 0.027 0.004 0.003 0.057 0.093 0.027 0.031 0.059 4 T 0.001 0.006 0.821 0.005 0.029 0.014 0.001 0.001 0.011 0.059 0.012 0.025 0.017 5 K 0.001 0.005 0.127 0.004 0.174 0.204 0.001 0.001 0.008 0.089 0.376 0.003 0.011 6 D 0.001 0.011 0.239 0.007 0.078 0.275 0.001 0.001 0.008 0.127 0.241 0.005 0.008 7 M 0.003 0.031 0.333 0.001 0.031 0.312 0.001 0.001 0.012 0.230 0.018 0.017 0.010 8 T 0.004 0.018 0.526 0.001 0.008 0.295 0.001 0.001 0.016 0.058 0.009 0.012 0.051 9 F 0.001 0.004 0.014 0.001 0.015 0.940 0.001 0.001 0.001 0.004 0.015 0.001 0.006 10 A 0.001 0.001 0.002 0.001 0.014 0.976 0.001 0.001 0.001 0.001 0.005 0.001 0.001 11 Q 0.001 0.001 0.001 0.001 0.035 0.954 0.001 0.001 0.001 0.001 0.005 0.001 0.002 12 A 0.001 0.001 0.001 0.001 0.019 0.966 0.001 0.001 0.001 0.001 0.013 0.001 0.001 13 L 0.001 0.001 0.002 0.001 0.039 0.912 0.001 0.001 0.001 0.001 0.041 0.001 0.002 14 Q 0.001 0.001 0.004 0.001 0.030 0.834 0.001 0.001 0.001 0.005 0.125 0.001 0.001 15 T 0.001 0.005 0.026 0.001 0.016 0.765 0.001 0.001 0.001 0.027 0.157 0.001 0.002 16 H 0.001 0.004 0.486 0.001 0.006 0.273 0.001 0.001 0.001 0.188 0.035 0.003 0.004 17 P 0.001 0.001 0.032 0.001 0.028 0.685 0.001 0.001 0.001 0.014 0.240 0.001 0.001 18 G 0.001 0.001 0.036 0.001 0.047 0.612 0.001 0.001 0.001 0.040 0.262 0.001 0.001 19 V 0.001 0.003 0.083 0.001 0.036 0.829 0.001 0.001 0.001 0.020 0.023 0.001 0.004 20 A 0.001 0.002 0.027 0.001 0.006 0.936 0.001 0.001 0.002 0.013 0.011 0.001 0.001 21 G 0.001 0.003 0.009 0.001 0.014 0.938 0.001 0.001 0.004 0.011 0.014 0.001 0.005 22 V 0.001 0.001 0.004 0.001 0.013 0.944 0.001 0.001 0.001 0.002 0.024 0.001 0.007 23 L 0.002 0.002 0.003 0.002 0.027 0.933 0.001 0.001 0.001 0.001 0.023 0.001 0.005 24 R 0.001 0.001 0.002 0.001 0.041 0.933 0.001 0.001 0.001 0.002 0.015 0.003 0.002 25 S 0.002 0.002 0.006 0.001 0.044 0.876 0.001 0.001 0.001 0.005 0.055 0.002 0.005 26 Y 0.003 0.003 0.028 0.007 0.035 0.453 0.001 0.001 0.002 0.042 0.419 0.005 0.003 27 N 0.001 0.003 0.088 0.002 0.010 0.064 0.001 0.001 0.001 0.072 0.754 0.003 0.002 28 L 0.001 0.014 0.510 0.003 0.034 0.050 0.001 0.001 0.004 0.212 0.158 0.006 0.008 29 G 0.002 0.030 0.371 0.003 0.028 0.049 0.001 0.002 0.020 0.275 0.184 0.021 0.014 30 C 0.003 0.035 0.455 0.005 0.082 0.066 0.003 0.007 0.031 0.140 0.129 0.010 0.036 31 I 0.004 0.029 0.357 0.014 0.070 0.062 0.004 0.008 0.032 0.233 0.152 0.020 0.015 32 G 0.005 0.027 0.342 0.007 0.042 0.050 0.003 0.006 0.052 0.270 0.145 0.020 0.031 33 C 0.003 0.020 0.556 0.004 0.028 0.043 0.002 0.004 0.041 0.208 0.041 0.019 0.032 34 M 0.004 0.033 0.400 0.009 0.067 0.131 0.003 0.003 0.026 0.157 0.106 0.015 0.047 35 G 0.004 0.020 0.213 0.008 0.149 0.265 0.002 0.002 0.016 0.124 0.164 0.016 0.019 36 A 0.004 0.013 0.202 0.005 0.170 0.316 0.001 0.001 0.008 0.108 0.149 0.007 0.017 37 Q 0.003 0.014 0.143 0.004 0.098 0.449 0.001 0.001 0.007 0.083 0.177 0.006 0.016 38 N 0.001 0.007 0.089 0.002 0.034 0.658 0.001 0.001 0.004 0.061 0.130 0.004 0.007 39 E 0.002 0.010 0.080 0.001 0.026 0.694 0.001 0.001 0.004 0.105 0.063 0.007 0.006 40 S 0.002 0.009 0.143 0.001 0.024 0.721 0.001 0.001 0.003 0.036 0.032 0.003 0.027 41 L 0.001 0.001 0.008 0.001 0.009 0.967 0.001 0.001 0.001 0.002 0.011 0.001 0.001 42 E 0.001 0.001 0.002 0.001 0.012 0.978 0.001 0.001 0.001 0.002 0.006 0.001 0.001 43 Q 0.001 0.001 0.002 0.001 0.014 0.971 0.001 0.001 0.001 0.003 0.008 0.001 0.001 44 G 0.001 0.001 0.003 0.001 0.012 0.967 0.001 0.001 0.001 0.002 0.014 0.001 0.001 45 A 0.001 0.001 0.003 0.001 0.035 0.871 0.001 0.001 0.001 0.002 0.084 0.001 0.002 46 N 0.001 0.001 0.003 0.001 0.045 0.878 0.001 0.001 0.001 0.004 0.065 0.001 0.001 47 A 0.001 0.003 0.013 0.001 0.126 0.754 0.001 0.001 0.001 0.010 0.088 0.001 0.002 48 H 0.001 0.003 0.021 0.001 0.042 0.200 0.001 0.001 0.001 0.051 0.677 0.001 0.001 49 G 0.001 0.009 0.124 0.001 0.019 0.054 0.001 0.001 0.003 0.099 0.689 0.001 0.002 50 L 0.001 0.041 0.637 0.001 0.004 0.024 0.001 0.001 0.005 0.265 0.020 0.003 0.002 51 N 0.001 0.004 0.854 0.001 0.001 0.004 0.001 0.001 0.003 0.127 0.003 0.001 0.003 52 V 0.001 0.001 0.036 0.001 0.106 0.809 0.001 0.001 0.001 0.007 0.041 0.001 0.001 53 E 0.001 0.001 0.003 0.001 0.050 0.934 0.001 0.001 0.001 0.005 0.007 0.001 0.001 54 D 0.001 0.001 0.002 0.001 0.098 0.895 0.001 0.001 0.001 0.003 0.002 0.001 0.001 55 I 0.001 0.001 0.003 0.001 0.011 0.974 0.001 0.001 0.001 0.004 0.007 0.001 0.001 56 L 0.001 0.001 0.001 0.001 0.018 0.950 0.001 0.001 0.001 0.001 0.029 0.001 0.001 57 R 0.001 0.001 0.001 0.001 0.046 0.830 0.001 0.001 0.001 0.001 0.124 0.001 0.001 58 D 0.001 0.001 0.001 0.001 0.052 0.902 0.001 0.001 0.001 0.001 0.044 0.001 0.001 59 L 0.001 0.002 0.005 0.001 0.074 0.863 0.001 0.001 0.001 0.005 0.050 0.001 0.001 60 N 0.001 0.002 0.012 0.001 0.041 0.290 0.001 0.001 0.001 0.014 0.639 0.001 0.001 61 A 0.001 0.004 0.077 0.001 0.035 0.129 0.001 0.001 0.002 0.042 0.711 0.001 0.001 62 L 0.001 0.023 0.508 0.001 0.020 0.080 0.001 0.001 0.007 0.257 0.102 0.001 0.001 63 A 0.001 0.009 0.599 0.001 0.012 0.020 0.001 0.001 0.022 0.309 0.025 0.001 0.002