# TARGET TR469 # Using neural net dunbrack-40pc-3157-t04-IDGaaH13-3-13-7-13-9-13-11-pb-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 16 (1 pb ) # The input amino acid frequencies were determined from # alignment TR469.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 19.6664 # Pos AA A B C D E F G H I J K L M N O P 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 Q 0.142 0.073 0.230 0.312 0.004 0.034 0.007 0.010 0.012 0.007 0.028 0.031 0.058 0.002 0.012 0.039 2 K 0.049 0.076 0.195 0.455 0.006 0.084 0.003 0.003 0.012 0.002 0.012 0.016 0.038 0.001 0.002 0.046 3 F 0.031 0.090 0.214 0.539 0.016 0.034 0.005 0.004 0.002 0.001 0.017 0.010 0.022 0.002 0.001 0.010 4 T 0.003 0.017 0.012 0.018 0.010 0.887 0.004 0.004 0.001 0.001 0.006 0.017 0.017 0.002 0.001 0.001 5 K 0.002 0.009 0.003 0.015 0.002 0.005 0.002 0.009 0.001 0.001 0.922 0.007 0.017 0.003 0.002 0.002 6 D 0.005 0.173 0.024 0.041 0.001 0.011 0.002 0.005 0.016 0.001 0.004 0.646 0.015 0.001 0.033 0.023 7 M 0.014 0.011 0.733 0.068 0.001 0.002 0.006 0.001 0.002 0.001 0.002 0.002 0.038 0.001 0.002 0.119 8 T 0.012 0.001 0.016 0.002 0.002 0.900 0.002 0.001 0.001 0.001 0.004 0.007 0.052 0.001 0.001 0.001 9 F 0.001 0.001 0.001 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.969 0.002 0.017 0.001 0.001 0.001 10 A 0.001 0.015 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.948 0.027 0.001 0.002 0.001 11 Q 0.001 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.007 0.977 0.001 0.001 0.007 12 A 0.001 0.001 0.006 0.002 0.001 0.002 0.002 0.001 0.001 0.001 0.003 0.011 0.962 0.002 0.001 0.008 13 L 0.001 0.001 0.002 0.001 0.001 0.002 0.004 0.001 0.001 0.001 0.001 0.006 0.976 0.004 0.002 0.002 14 Q 0.001 0.002 0.002 0.004 0.001 0.002 0.006 0.001 0.001 0.001 0.004 0.001 0.930 0.025 0.008 0.014 15 T 0.004 0.034 0.024 0.018 0.001 0.003 0.011 0.003 0.004 0.001 0.006 0.023 0.670 0.015 0.038 0.146 16 H 0.009 0.001 0.012 0.001 0.002 0.034 0.091 0.001 0.001 0.002 0.003 0.010 0.759 0.056 0.008 0.012 17 P 0.005 0.005 0.009 0.002 0.001 0.007 0.002 0.017 0.001 0.001 0.334 0.007 0.557 0.002 0.047 0.005 18 G 0.002 0.014 0.002 0.005 0.001 0.011 0.003 0.001 0.009 0.008 0.035 0.523 0.358 0.004 0.001 0.025 19 V 0.007 0.001 0.007 0.001 0.001 0.003 0.008 0.001 0.001 0.001 0.015 0.030 0.917 0.007 0.005 0.001 20 A 0.001 0.005 0.005 0.004 0.001 0.002 0.001 0.001 0.001 0.001 0.016 0.072 0.883 0.001 0.005 0.004 21 G 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.988 0.001 0.001 0.001 22 V 0.001 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.988 0.001 0.001 0.001 23 L 0.001 0.001 0.001 0.003 0.001 0.003 0.003 0.001 0.001 0.001 0.001 0.010 0.975 0.002 0.001 0.001 24 R 0.001 0.001 0.002 0.004 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.978 0.002 0.004 0.002 25 S 0.001 0.003 0.005 0.010 0.009 0.002 0.038 0.001 0.001 0.001 0.003 0.002 0.370 0.505 0.004 0.046 26 Y 0.012 0.005 0.039 0.009 0.002 0.006 0.028 0.024 0.001 0.001 0.006 0.006 0.360 0.030 0.446 0.025 27 N 0.006 0.016 0.057 0.010 0.026 0.027 0.134 0.007 0.020 0.027 0.019 0.010 0.193 0.143 0.025 0.279 28 L 0.294 0.034 0.032 0.028 0.011 0.014 0.038 0.070 0.004 0.003 0.050 0.014 0.154 0.034 0.189 0.030 29 G 0.025 0.104 0.203 0.059 0.006 0.055 0.016 0.021 0.075 0.063 0.018 0.073 0.108 0.006 0.030 0.139 30 C 0.069 0.011 0.031 0.020 0.124 0.097 0.204 0.004 0.009 0.016 0.083 0.037 0.161 0.116 0.004 0.015 31 I 0.015 0.069 0.051 0.038 0.009 0.018 0.010 0.419 0.002 0.001 0.071 0.048 0.099 0.007 0.137 0.005 32 G 0.008 0.059 0.038 0.093 0.005 0.028 0.023 0.008 0.258 0.186 0.018 0.084 0.063 0.008 0.009 0.113 33 C 0.254 0.011 0.065 0.020 0.033 0.058 0.133 0.006 0.007 0.007 0.055 0.047 0.251 0.033 0.011 0.009 34 M 0.016 0.050 0.076 0.086 0.006 0.042 0.009 0.106 0.003 0.003 0.260 0.090 0.188 0.007 0.045 0.013 35 G 0.017 0.029 0.024 0.061 0.004 0.045 0.013 0.004 0.070 0.048 0.053 0.297 0.260 0.007 0.008 0.059 36 A 0.022 0.012 0.030 0.023 0.011 0.016 0.031 0.003 0.001 0.001 0.060 0.059 0.691 0.020 0.010 0.010 37 Q 0.004 0.030 0.039 0.035 0.001 0.051 0.008 0.019 0.002 0.002 0.070 0.144 0.541 0.006 0.019 0.026 38 N 0.007 0.008 0.023 0.016 0.001 0.066 0.015 0.002 0.010 0.003 0.056 0.064 0.690 0.006 0.006 0.027 39 E 0.020 0.044 0.072 0.037 0.001 0.005 0.005 0.002 0.001 0.001 0.056 0.092 0.645 0.002 0.008 0.012 40 S 0.001 0.001 0.004 0.002 0.001 0.147 0.004 0.001 0.001 0.001 0.009 0.059 0.768 0.001 0.001 0.002 41 L 0.001 0.001 0.001 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.190 0.010 0.787 0.001 0.001 0.001 42 E 0.001 0.021 0.001 0.005 0.001 0.001 0.004 0.001 0.001 0.001 0.009 0.372 0.571 0.008 0.006 0.001 43 Q 0.001 0.001 0.001 0.002 0.001 0.001 0.002 0.001 0.001 0.001 0.002 0.004 0.979 0.001 0.006 0.005 44 G 0.001 0.001 0.017 0.006 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.004 0.941 0.004 0.002 0.018 45 A 0.002 0.001 0.006 0.008 0.001 0.002 0.005 0.001 0.001 0.001 0.002 0.004 0.956 0.005 0.005 0.004 46 N 0.001 0.002 0.003 0.009 0.003 0.008 0.004 0.001 0.001 0.001 0.002 0.002 0.930 0.018 0.003 0.014 47 A 0.001 0.001 0.001 0.001 0.012 0.001 0.030 0.001 0.001 0.001 0.002 0.001 0.016 0.933 0.001 0.002 48 H 0.001 0.003 0.005 0.001 0.001 0.001 0.001 0.038 0.001 0.001 0.001 0.003 0.014 0.001 0.923 0.007 49 G 0.001 0.001 0.015 0.002 0.001 0.003 0.003 0.001 0.030 0.004 0.001 0.001 0.008 0.001 0.001 0.930 50 L 0.915 0.015 0.049 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.001 0.002 0.002 51 N 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.001 0.002 0.004 0.001 0.001 0.001 52 V 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.002 0.001 0.001 0.001 53 E 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 54 D 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.992 0.001 0.001 0.001 55 I 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 56 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 57 R 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 58 D 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.963 0.017 0.001 0.017 59 L 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.979 0.005 0.009 0.002 60 N 0.001 0.001 0.004 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.946 0.011 0.009 0.025 61 A 0.004 0.003 0.002 0.002 0.001 0.001 0.026 0.001 0.001 0.001 0.005 0.005 0.741 0.125 0.013 0.071 62 L 0.009 0.006 0.042 0.002 0.001 0.002 0.103 0.002 0.001 0.001 0.003 0.011 0.587 0.099 0.094 0.038 63 A 0.007 0.012 0.080 0.013 0.003 0.012 0.073 0.010 0.002 0.002 0.016 0.008 0.478 0.035 0.132 0.116