# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.1240	a.248.1.1	133507
1w7jA	795	6.413	b.34.3.1,c.37.1.9	120688,120689
1u3eM	174	7.384	d.4.1.3,d.285.1.1	107640,107641
2bkhA	814	8.527		
2akaA	776	10.60		
1y6uA	70	10.77		
1mvwA	840	13.32	i.15.1.1	79523
1d0yA	761	13.68	b.34.3.1,c.37.1.9	24581,32178
1r9lA	309	15.02	c.94.1.1	97262
1f0nA	285	16.88	c.69.1.3	34636
2d2mA	140	18.01		
1s69A	124	19.48	a.1.1.1	105305
1w9iA	770	23.51		
2ouwA	138	25.76		
3c8yA	574	28.32		
2ofyA	86	29.03		
2v26A	784	31.87		
1idrA	136	33.45	a.1.1.1	62301
2al3A	90	33.93	d.15.1.2	126957
1yhuB	144	34.94		
2d5rB	116	35.02		
1tikA	213	35.64	c.23.5.3	107003
1dlwA	116	37.68	a.1.1.1	14982
2gdjA	264	45.52	c.37.1.11	135018
2gwfB	134	46.12		
2cfmA	561	46.97		
1y75B	118	47.78		
2nxoA	291	47.99		
1s6lA	212	48.43		
3b5mA	205	49.25		
2aa1A	144	49.49	a.1.1.2	126463
2f6mA	65	51.17	a.2.17.1	133051
1x9fB	145	51.21	a.1.1.2	114984
1lvk	762	53.45		
2j01U	118	57.80		
2fjrA	189	58.80		
2amxA	376	59.85	c.1.9.1	127024
1xb4A	202	60.24	a.4.5.54,a.4.5.54	121832,121833
1zupA	315	62.84	c.55.3.11	125681
2zfoA	140	63.03		
1ithA	141	63.64	a.1.1.2	15623
2qnuA	226	66.05		
2b5aA	77	66.12	a.35.1.3	127882
1vflA	356	66.37	c.1.9.1	120041
1gyzA	60	66.47	a.144.2.1	70793
1aorA	605	66.79	a.110.1.1,d.152.1.1	19042,41794
1wuiS	267	68.27	e.19.1.1	121290
2h8fA	143	70.24	a.1.1.2	136239
2oa4A	101	70.99		
1fx7A	230	71.70	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2d2mB	142	72.06		
2ieaA	886	75.85	c.36.1.6,c.36.1.10,c.48.1.1	137294,137295,137296
1gbsA	185	76.24	d.2.1.5	36986
1cg5B	141	79.02	a.1.1.2	15585
1h2eA	207	80.54	c.60.1.1	70857
1e0gA	48	84.10	d.7.1.1	37325
2zfoB	142	86.92		
1ubkS	267	88.16	e.19.1.1	88423
1eca	136	88.51