# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.08032	a.248.1.1	133507
1mvwA	840	4.243	i.15.1.1	79523
2akaA	776	4.322		
1w7jA	795	4.478	b.34.3.1,c.37.1.9	120688,120689
2bkhA	814	4.516		
1d0yA	761	5.068	b.34.3.1,c.37.1.9	24581,32178
1u3eM	174	5.814	d.4.1.3,d.285.1.1	107640,107641
1y6uA	70	6.228		
1y75B	118	6.752		
1w9iA	770	9.654		
2d5rB	116	9.98		
1r9lA	309	12.72	c.94.1.1	97262
1s69A	124	13.61	a.1.1.1	105305
3c8yA	574	14.50		
1dlwA	116	15.43	a.1.1.1	14982
2gwfB	134	15.65		
1tikA	213	15.69	c.23.5.3	107003
2d2mA	140	16.05		
1idrA	136	16.21	a.1.1.1	62301
1f0nA	285	18.95	c.69.1.3	34636
2v26A	784	19.66		
1s6lA	212	20.63		
2nxoA	291	21.33		
1yhuB	144	22.18		
2al3A	90	23.77	d.15.1.2	126957
1lvk	762	24.14		
1h2eA	207	24.63	c.60.1.1	70857
2ofyA	86	26.19		
2qnuA	226	27.54		
2j01U	118	28.63		
2z15A	130	29.55		
2gdjA	264	31.56	c.37.1.11	135018
2ouwA	138	31.57		
1ae7A	119	32.28	a.133.1.2	19553
2fjrA	189	39.53		
2ogbA	126	43.76		
1zupA	315	47.34	c.55.3.11	125681
2fzpA	144	47.77		
1gyzA	60	47.82	a.144.2.1	70793
1fx7A	230	49.97	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2cfmA	561	50.65		
2ghjA	118	50.93		
1xb4A	202	54.26	a.4.5.54,a.4.5.54	121832,121833
1azo	232	54.57		
1bedA	181	55.92	c.47.1.13	90330
2z98A	200	58.05		
1mp9A	198	58.30	d.129.1.1,d.129.1.1	91385,91386
1kbjA	412	59.26	c.1.4.1	72280
1wuiS	267	60.16	e.19.1.1	121290
1ubkS	267	61.86	e.19.1.1	88423
1vehA	92	62.31	d.52.8.1	113635
2nsvA	52	62.55		
1qnaA	200	66.71	d.129.1.1,d.129.1.1	41226,41227
2oq2A	261	68.47		
2f6mA	65	71.39	a.2.17.1	133051
2ezhA	75	73.66	a.4.1.2	16029
2qisA	374	74.46		
1aorA	605	75.09	a.110.1.1,d.152.1.1	19042,41794
2amxA	376	75.14	c.1.9.1	127024
1e0gA	48	75.74	d.7.1.1	37325
2aa1A	144	76.12	a.1.1.2	126463
3b5mA	205	80.44		
1vflA	356	80.62	c.1.9.1	120041
1chuA	540	80.64	a.7.3.1,c.3.1.4,d.168.1.1	16325,30424,42307
1x9fB	145	81.34	a.1.1.2	114984
2ag6A	314	85.35		
2b5aA	77	86.33	a.35.1.3	127882
2oy9A	98	86.45		
2oa4A	101	87.89		
2vl6A	268	87.93		
2dklA	85	89.68	a.5.2.1	131555