# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.02833	a.248.1.1	133507
2akaA	776	3.935		
1u3eM	174	4.224	d.4.1.3,d.285.1.1	107640,107641
1w7jA	795	4.961	b.34.3.1,c.37.1.9	120688,120689
1d0yA	761	5.104	b.34.3.1,c.37.1.9	24581,32178
2bkhA	814	5.146		
1mvwA	840	7.128	i.15.1.1	79523
1w9iA	770	8.250		
1dlwA	116	8.305	a.1.1.1	14982
2ouwA	138	11.73		
2d5rB	116	12.66		
1y6uA	70	13.83		
1s6lA	212	15.58		
2v26A	784	15.66		
2cfmA	561	15.97		
1lvk	762	16.30		
2j01U	118	16.59		
2d2mA	140	20.21		
1idrA	136	21.54	a.1.1.1	62301
2al3A	90	22.42	d.15.1.2	126957
2gdjA	264	23.99	c.37.1.11	135018
2ghjA	118	27.68		
1e0gA	48	27.92	d.7.1.1	37325
1s69A	124	28.71	a.1.1.1	105305
2gwfB	134	28.89		
1yhuB	144	29.43		
2amxA	376	29.51	c.1.9.1	127024
1xb4A	202	32.57	a.4.5.54,a.4.5.54	121832,121833
2z15A	130	32.68		
2oy9A	98	33.60		
1e39A	571	34.12	a.138.1.3,c.3.1.4,d.168.1.1	19694,30431,42314
1f0nA	285	35.59	c.69.1.3	34636
1mp9A	198	37.68	d.129.1.1,d.129.1.1	91385,91386
1r9lA	309	37.76	c.94.1.1	97262
2nxoA	291	39.93		
2nsaA	170	40.46		
2cobA	70	42.07	a.4.1.15	130673
2ofyA	86	42.91		
2z2mA	168	43.61		
1aorA	605	44.75	a.110.1.1,d.152.1.1	19042,41794
2de3A	365	46.19		
1vflA	356	46.46	c.1.9.1	120041
1qo8A	566	47.63	a.138.1.3,c.3.1.4,d.168.1.1	19696,30433,42316
2zc3A	168	48.50		
1wuiS	267	49.32	e.19.1.1	121290
2pgfA	371	50.35		
3c6fA	153	52.04		
1x9fB	145	52.54	a.1.1.2	114984
1azo	232	55.73		
1u55A	188	56.36	d.278.1.1	107677
2cwcA	303	57.05		
2b5aA	77	58.40	a.35.1.3	127882
3c8yA	574	59.14		
2hp0A	466	62.60		
3clmA	352	62.75		
2fzpA	144	62.98		
2ip2A	334	63.29		
1a4mA	349	65.75	c.1.9.1	29014
1bedA	181	68.53	c.47.1.13	90330
1ubkS	267	69.05	e.19.1.1	88423
2fjrA	189	70.12		
2ogbA	126	70.39		
1qnaA	200	71.28	d.129.1.1,d.129.1.1	41226,41227
2rcyA	262	74.02		
2d0iA	333	74.27		
2zfoA	140	74.39		
2i1qA	322	74.48	a.60.4.1,c.37.1.11	136984,136985
1etxA	98	74.56	a.4.1.12	18978
2hinA	71	74.60		
1x19A	359	74.85		
2h8fA	143	75.81	a.1.1.2	136239
3b5mA	205	76.53		
1fx7A	230	77.80	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2ezhA	75	77.96	a.4.1.2	16029
2fyxA	143	78.02	d.58.57.1	134411
2d2mB	142	80.53		
3c24A	286	80.87		
2aa1A	144	81.27	a.1.1.2	126463
1k20A	310	81.82	c.107.1.1	68027
1jkoC	52	82.44	a.4.1.2	66809
2oq2A	261	82.84		
1tw3A	360	82.84	a.4.5.29,c.66.1.12	107373,107374
1z67A	135	83.73	a.259.1.1	124507
2ieaA	886	85.47	c.36.1.6,c.36.1.10,c.48.1.1	137294,137295,137296
1gbsA	185	85.63	d.2.1.5	36986
2z99A	219	86.14		
2vl6A	268	86.27