# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.3668	a.248.1.1	133507
1u3eM	174	13.41	d.4.1.3,d.285.1.1	107640,107641
1w7jA	795	14.78	b.34.3.1,c.37.1.9	120688,120689
1tikA	213	15.82	c.23.5.3	107003
2akaA	776	16.57		
1d0yA	761	18.36	b.34.3.1,c.37.1.9	24581,32178
1f0nA	285	18.63	c.69.1.3	34636
1s69A	124	19.12	a.1.1.1	105305
1y6uA	70	19.13		
1idrA	136	19.86	a.1.1.1	62301
2bkhA	814	20.24		
1r9lA	309	21.53	c.94.1.1	97262
1mvwA	840	30.60	i.15.1.1	79523
2ouwA	138	30.77		
2gwfB	134	31.46		
1dlwA	116	32.09	a.1.1.1	14982
3c8yA	574	37.13		
2ofyA	86	40.53		
1aorA	605	42.95	a.110.1.1,d.152.1.1	19042,41794
1w9iA	770	46.62		
2cfmA	561	46.77		
2d2mA	140	47.15		
2nxoA	291	47.78		
1gbsA	185	50.57	d.2.1.5	36986
1jpyA	137	52.30	g.17.1.6	67065
1vflA	356	56.26	c.1.9.1	120041
1gbs	185	58.99		
2aa1A	144	60.65	a.1.1.2	126463
2v26A	784	60.82		
2b5aA	77	62.88	a.35.1.3	127882
1yhuB	144	64.82		
2d5rB	116	65.86		
2qnuA	226	68.48		
2f6mA	65	69.00	a.2.17.1	133051
1lvk	762	69.83		
1fx7A	230	70.63	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qisA	374	70.78		
2ezhA	75	73.66	a.4.1.2	16029
2amxA	376	74.97	c.1.9.1	127024
1a4mA	349	76.91	c.1.9.1	29014
1etxA	98	82.63	a.4.1.12	18978
1vehA	92	83.90	d.52.8.1	113635
1x9fA	151	85.48	a.1.1.2	114983
2h8fA	143	85.67	a.1.1.2	136239
2ieaA	886	86.98	c.36.1.6,c.36.1.10,c.48.1.1	137294,137295,137296
1gyzA	60	88.77	a.144.2.1	70793
2gdjA	264	89.37	c.37.1.11	135018