# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.4012	a.248.1.1	133507
1w7jA	795	9.600	b.34.3.1,c.37.1.9	120688,120689
1u3eM	174	11.99	d.4.1.3,d.285.1.1	107640,107641
2akaA	776	12.55		
2bkhA	814	13.28		
1d0yA	761	14.63	b.34.3.1,c.37.1.9	24581,32178
1f0nA	285	15.73	c.69.1.3	34636
1tikA	213	16.64	c.23.5.3	107003
1mvwA	840	19.16	i.15.1.1	79523
1y6uA	70	19.45		
3c8yA	574	20.91		
1s69A	124	24.48	a.1.1.1	105305
1cc8A	73	25.82	d.58.17.1	39343
1w9iA	770	36.55		
1idrA	136	38.57	a.1.1.1	62301
2ofyA	86	42.98		
1r9lA	309	43.08	c.94.1.1	97262
2gwfB	134	43.48		
2d5rB	116	44.56		
2v26A	784	45.60		
2ouwA	138	46.82		
1vehA	92	53.13	d.52.8.1	113635
1lvk	762	54.05		
2aa1A	144	55.63	a.1.1.2	126463
1gbsA	185	56.40	d.2.1.5	36986
1dlwA	116	56.66	a.1.1.1	14982
1gbs	185	56.88		
1gyzA	60	57.09	a.144.2.1	70793
2qnuA	226	57.42		
1y75B	118	57.54		
2cfmA	561	57.57		
1yhuB	144	58.14		
1aorA	605	58.26	a.110.1.1,d.152.1.1	19042,41794
1jpyA	137	61.03	g.17.1.6	67065
2d2mA	140	65.46		
2ezhA	75	68.47	a.4.1.2	16029
2gdjA	264	69.00	c.37.1.11	135018
2qisA	374	79.48		
2h8fA	143	84.80	a.1.1.2	136239
2b5aA	77	84.94	a.35.1.3	127882
2j01U	118	89.00		
1v4xA	144	89.84	a.1.1.2	108363