# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.3551	a.248.1.1	133507
1w7jA	795	11.80	b.34.3.1,c.37.1.9	120688,120689
1u3eM	174	13.06	d.4.1.3,d.285.1.1	107640,107641
1tikA	213	13.97	c.23.5.3	107003
2akaA	776	14.01		
2bkhA	814	14.31		
1d0yA	761	15.59	b.34.3.1,c.37.1.9	24581,32178
1y6uA	70	21.67		
3c8yA	574	22.07		
1s69A	124	23.81	a.1.1.1	105305
1f0nA	285	24.11	c.69.1.3	34636
2gwfB	134	25.71		
1mvwA	840	28.11	i.15.1.1	79523
1idrA	136	32.07	a.1.1.1	62301
1r9lA	309	36.71	c.94.1.1	97262
1w9iA	770	40.00		
1dlwA	116	41.63	a.1.1.1	14982
2d2mA	140	44.87		
2ofyA	86	46.85		
1y75B	118	48.72		
2aa1A	144	50.16	a.1.1.2	126463
2ouwA	138	53.46		
2v26A	784	53.73		
2gdjA	264	55.88	c.37.1.11	135018
2qnuA	226	56.37		
1yhuB	144	56.39		
2d5rB	116	57.52		
1gbsA	185	57.79	d.2.1.5	36986
1jpyA	137	60.09	g.17.1.6	67065
1gbs	185	60.50		
1lvk	762	61.04		
2cfmA	561	62.49		
1aorA	605	67.26	a.110.1.1,d.152.1.1	19042,41794
1ae7A	119	68.36	a.133.1.2	19553
2nxoA	291	69.49		
2h8fA	143	72.93	a.1.1.2	136239
1vehA	92	74.46	d.52.8.1	113635
2f6mA	65	75.86	a.2.17.1	133051
2ezhA	75	76.38	a.4.1.2	16029
2ogbA	126	76.98		
2al3A	90	78.89	d.15.1.2	126957
2fzpA	144	79.97		
1gyzA	60	84.02	a.144.2.1	70793
2fjrA	189	85.31		
2qisA	374	85.59		
1cc8A	73	85.84	d.58.17.1	39343
1fx7A	230	86.61	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090