# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.04614	a.248.1.1	133507
1w7jA	795	7.059	b.34.3.1,c.37.1.9	120688,120689
2bkhA	814	10.22		
2akaA	776	13.54		
1y6uA	70	14.50		
2j01U	118	14.52		
2gdjA	264	15.01	c.37.1.11	135018
1u3eM	174	17.43	d.4.1.3,d.285.1.1	107640,107641
1d0yA	761	20.05	b.34.3.1,c.37.1.9	24581,32178
1w9iA	770	20.66		
1mvwA	840	26.98	i.15.1.1	79523
2i1qA	322	30.99	a.60.4.1,c.37.1.11	136984,136985
2dlxA	153	31.78		
2ofyA	86	33.17		
2qwvA	208	33.25		
2qnuA	226	33.78		
1cc8A	73	36.99	d.58.17.1	39343
2v26A	784	39.16		
2d5rB	116	39.81		
1e0gA	48	40.48	d.7.1.1	37325
1etxA	98	45.97	a.4.1.12	18978
3c8yA	574	51.42		
2z15A	130	52.44		
2dklA	85	53.03	a.5.2.1	131555
2nxoA	291	57.04		
1zupA	315	58.51	c.55.3.11	125681
2d2mA	140	59.01		
2cvhA	220	59.94		
1y75B	118	62.33		
1lvk	762	66.43		
1gyzA	60	68.64	a.144.2.1	70793
1s6lA	212	69.45		
1fnc	314	70.32		
1jb9A	316	72.53	b.43.4.2,c.25.1.1	62840,62841
1dlwA	116	74.97	a.1.1.1	14982
1yhuB	144	75.08		
1s69A	124	78.90	a.1.1.1	105305
2d2mB	142	79.81		
1idrA	136	83.50	a.1.1.1	62301
2al3A	90	84.22	d.15.1.2	126957
2aa1A	144	84.28	a.1.1.2	126463
1fe0A	68	88.02	d.58.17.1	39345
1vflA	356	88.34	c.1.9.1	120041