# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.3448	a.248.1.1	133507
2bkhA	814	8.415		
2akaA	776	9.96		
1w7jA	795	10.92	b.34.3.1,c.37.1.9	120688,120689
1d0yA	761	15.33	b.34.3.1,c.37.1.9	24581,32178
1u3eM	174	16.12	d.4.1.3,d.285.1.1	107640,107641
2d5rB	116	16.66		
1w9iA	770	22.31		
2v26A	784	23.52		
3c8yA	574	26.28		
1r9lA	309	28.10	c.94.1.1	97262
1mvwA	840	30.72	i.15.1.1	79523
2ofyA	86	32.90		
2gwfB	134	34.94		
1y6uA	70	35.47		
2d2mA	140	37.15		
1s69A	124	37.27	a.1.1.1	105305
1yhuB	144	38.82		
2gdjA	264	41.18	c.37.1.11	135018
1lvk	762	42.50		
2ouwA	138	43.02		
2z15A	130	43.74		
1f0nA	285	45.62	c.69.1.3	34636
2al3A	90	51.27	d.15.1.2	126957
2cfmA	561	53.17		
1y75B	118	59.76		
1idrA	136	63.47	a.1.1.1	62301
2f6mA	65	65.62	a.2.17.1	133051
1dlwA	116	67.92	a.1.1.1	14982
2nxoA	291	69.99		
2fzpA	144	77.98		
2ogbA	126	78.70		
2qisA	374	79.57		
1tikA	213	80.65	c.23.5.3	107003
3b5mA	205	81.46		
2h8fA	143	81.66	a.1.1.2	136239
1x9fB	145	84.76	a.1.1.2	114984
2ezhA	75	84.84	a.4.1.2	16029
1aorA	605	85.69	a.110.1.1,d.152.1.1	19042,41794
1jpyA	137	87.45	g.17.1.6	67065
2aa1A	144	88.44	a.1.1.2	126463