# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fi0A 81 0.01744 a.248.1.1 133507 2pgfA 371 0.3655 1peqA 714 0.8141 a.98.1.1,c.7.1.2 104131,104132 1u3eM 174 1.957 d.4.1.3,d.285.1.1 107640,107641 1ae7A 119 2.671 a.133.1.2 19553 2yx0A 342 3.173 1y75B 118 3.529 2d5rB 116 5.563 1zejA 293 6.347 2rfmA 192 6.421 1nrfA 262 8.262 e.3.1.1 92086 2qezA 455 9.611 1eg5A 384 9.740 c.67.1.3 34429 1vqrA 297 10.66 a.211.1.3 114015 2hbvA 334 10.98 c.1.9.15 136320 2r6fA 972 11.69 2gdjA 264 11.89 c.37.1.11 135018 1a2aA 122 13.10 a.133.1.2 19540 2f8yA 223 13.33 1mc2A 122 13.73 a.133.1.2 74622 2zfoB 142 13.87 3cb2A 475 13.95 1di1A 300 15.24 a.128.1.4 19446 2zfoA 140 16.11 1f0nA 285 17.16 c.69.1.3 34636 1vjrA 271 17.62 c.108.1.14 100832 1s69A 124 18.27 a.1.1.1 105305 1a9xB 379 19.13 c.8.3.1,c.23.16.1 30732,31409 1yzxA 226 19.42 1xxsA 122 20.10 2vgeA 229 20.74 2al3A 90 21.17 d.15.1.2 126957 1thg 544 21.59 1y6uA 70 23.28 1xrsA 516 23.57 c.1.19.4 115883 2z15A 130 24.30 2r2iA 198 25.00 1idrA 136 25.51 a.1.1.1 62301 2ofyA 86 25.72 2ouwA 138 26.54 2d74B 148 27.19 1dlwA 116 27.23 a.1.1.1 14982 1yxhA 126 28.51 2jabA 136 29.45 1yxlA 119 29.51 a.133.1.2 124191 3c8yA 574 31.23 2d2mC 147 31.35 3c5rA 137 31.49 2jhnA 295 32.89 1n0qA 93 33.29 k.37.1.1 79754 1fcdA 401 33.39 c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1jltB 122 35.85 a.133.1.2 66868 1y75A 118 36.79 3cumA 302 37.56 1r1hA 696 37.73 d.92.1.4 104756 2ag6A 314 38.13 1iwmA 186 38.58 b.125.1.2 83758 2akaA 776 39.95 2qf4A 172 40.07 1oohA 126 40.72 a.39.2.1 93383 1yhuB 144 41.23 2d2mA 140 42.52 1ejbA 168 43.24 c.16.1.1 59417 1etxA 98 45.41 a.4.1.12 18978 1sw2A 275 46.33 c.94.1.1 106064 1ympA 135 46.60 1opr 213 46.64 1nnfA 309 47.17 c.94.1.1 85903 2qedA 258 48.97 1ohvA 472 49.21 c.67.1.4 93031 1ayfA 105 49.48 d.15.4.1 37684 1s6bA 119 49.65 a.133.1.2 98592 2iufA 688 52.70 2b5aA 77 53.12 a.35.1.3 127882 1s8iA 121 53.53 a.133.1.2 98735 3bblA 287 54.83 1ex1A 605 55.77 c.1.8.7,c.23.11.1 29013,31347 1w7jA 795 56.20 b.34.3.1,c.37.1.9 120688,120689 2f6mA 65 56.49 a.2.17.1 133051 2bt6A 108 56.60 d.15.4.1 129152 2z20A 432 56.62 2g5gX 268 56.89 2qtcA 886 57.09 1oqsB 122 57.11 a.133.1.2 93428 1smrA 335 58.01 b.50.1.2 26878 1mvwA 840 59.01 i.15.1.1 79523 2fyxA 143 59.57 d.58.57.1 134411 2bkhA 814 59.93 3b5mA 205 61.09 1s6bB 119 61.69 a.133.1.2 98593 2qisA 374 62.31 2gwfB 134 62.89 1j99A 293 63.26 c.37.1.5 71618 2aa1A 144 65.82 a.1.1.2 126463 1z67A 135 66.90 a.259.1.1 124507 1q0qA 406 67.11 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1u55A 188 67.38 d.278.1.1 107677 1bedA 181 68.82 c.47.1.13 90330 2g29A 417 68.95 1s5aA 150 69.39 d.17.4.10 98525 2h8fA 143 69.62 a.1.1.2 136239 1p3dA 475 71.50 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 2d2mD 145 71.77 1jf8A 131 72.39 c.44.1.1 66621 1gky 187 74.03 2vjqA 428 74.75 1neeA 138 76.64 d.241.1.1,g.59.1.1 91841,91842 2qgpA 112 76.85 1zlbA 122 76.93 a.133.1.2 125248 1w9iA 770 77.41 1cl8A 276 79.06 c.52.1.1 33230 2zf8A 278 79.26 2ovsA 118 79.50 1mvwC 147 82.02 i.15.1.1 79525 1e0gA 48 83.03 d.7.1.1 37325 1khyA 148 83.17 a.174.1.1 77410 1fx7A 230 85.48 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1wxxA 382 88.13 b.122.1.9,c.66.1.51 121418,121419 1wy9A 147 88.50 1thgA 544 88.53 c.69.1.17 34763 1vehA 92 89.30 d.52.8.1 113635 3cdlA 203 89.54