# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.3279	a.248.1.1	133507
2bkhA	814	8.653		
2akaA	776	9.876		
1w7jA	795	10.05	b.34.3.1,c.37.1.9	120688,120689
1u3eM	174	13.85	d.4.1.3,d.285.1.1	107640,107641
1d0yA	761	14.63	b.34.3.1,c.37.1.9	24581,32178
1r9lA	309	21.58	c.94.1.1	97262
1w9iA	770	21.71		
3c8yA	574	21.97		
1y6uA	70	23.88		
2v26A	784	26.72		
1mvwA	840	27.18	i.15.1.1	79523
1s69A	124	30.80	a.1.1.1	105305
2gdjA	264	36.98	c.37.1.11	135018
1y75B	118	37.77		
2gwfB	134	39.31		
1lvk	762	41.14		
2d5rB	116	41.62		
2ofyA	86	42.14		
2d2mA	140	43.29		
1f0nA	285	44.46	c.69.1.3	34636
1yhuB	144	49.29		
2al3A	90	51.77	d.15.1.2	126957
2ouwA	138	53.88		
1idrA	136	58.64	a.1.1.1	62301
2cfmA	561	59.05		
1ae7A	119	59.19	a.133.1.2	19553
2z15A	130	69.45		
2nxoA	291	69.62		
1dlwA	116	69.88	a.1.1.1	14982
1tikA	213	70.20	c.23.5.3	107003
3b5mA	205	73.98		
2f6mA	65	76.42	a.2.17.1	133051
1gyzA	60	83.82	a.144.2.1	70793
2fzpA	144	85.16		
1n1bA	549	86.43	a.102.4.1,a.128.1.3	79799,79800
2ogbA	126	86.47