# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.3156	a.248.1.1	133507
1f0nA	285	8.341	c.69.1.3	34636
1w7jA	795	9.804	b.34.3.1,c.37.1.9	120688,120689
2akaA	776	10.88		
1mvwA	840	11.40	i.15.1.1	79523
1d0yA	761	13.00	b.34.3.1,c.37.1.9	24581,32178
2gwfB	134	13.07		
1y6uA	70	13.10		
1u3eM	174	14.21	d.4.1.3,d.285.1.1	107640,107641
2bkhA	814	14.66		
3c8yA	574	16.08		
1y75B	118	16.12		
2d2mA	140	18.21		
1w9iA	770	23.55		
1yhuB	144	23.58		
1tikA	213	25.96	c.23.5.3	107003
1r9lA	309	26.32	c.94.1.1	97262
1s69A	124	28.26	a.1.1.1	105305
1ae7A	119	29.37	a.133.1.2	19553
2ogbA	126	30.81		
2nxoA	291	31.72		
2fzpA	144	36.66		
2ouwA	138	42.14		
2al3A	90	51.05	d.15.1.2	126957
1idrA	136	51.58	a.1.1.1	62301
1dlwA	116	51.68	a.1.1.1	14982
1vehA	92	54.57	d.52.8.1	113635
2aa1A	144	56.14	a.1.1.2	126463
1x9fB	145	56.50	a.1.1.2	114984
2v26A	784	58.31		
1lvk	762	62.11		
1xb4A	202	62.58	a.4.5.54,a.4.5.54	121832,121833
2h8fA	143	63.34	a.1.1.2	136239
2qnuA	226	64.88		
3b5mA	205	65.04		
2nsvA	52	66.79		
2ofyA	86	68.08		
1kbjA	412	68.52	c.1.4.1	72280
2j01U	118	72.14		
1ithA	141	73.34	a.1.1.2	15623
2gdjA	264	75.61	c.37.1.11	135018
2v9cA	215	76.47		
1gyzA	60	76.54	a.144.2.1	70793
2fjrA	189	79.22		
1s6lA	212	79.43		
1ubkS	267	79.52	e.19.1.1	88423
1aorA	605	85.96	a.110.1.1,d.152.1.1	19042,41794
2ezhA	75	87.29	a.4.1.2	16029
2f6mA	65	87.35	a.2.17.1	133051
1wuiS	267	88.85	e.19.1.1	121290
2zfoA	140	88.88		
1zupA	315	88.98	c.55.3.11	125681