# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.1754	a.248.1.1	133507
1w7jA	795	7.493	b.34.3.1,c.37.1.9	120688,120689
2bkhA	814	10.32		
2akaA	776	10.52		
1u3eM	174	11.47	d.4.1.3,d.285.1.1	107640,107641
2d2mA	140	12.65		
1d0yA	761	13.77	b.34.3.1,c.37.1.9	24581,32178
1dlwA	116	15.68	a.1.1.1	14982
1y6uA	70	17.35		
1mvwA	840	17.47	i.15.1.1	79523
1f0nA	285	20.77	c.69.1.3	34636
1y75B	118	22.52		
1w9iA	770	22.85		
1s69A	124	22.87	a.1.1.1	105305
1yhuB	144	22.90		
1idrA	136	23.22	a.1.1.1	62301
2gwfB	134	23.24		
1ae7A	119	32.33	a.133.1.2	19553
2ouwA	138	32.95		
3c8yA	574	35.49		
2v26A	784	37.84		
2nxoA	291	37.90		
1r9lA	309	40.21	c.94.1.1	97262
1tikA	213	45.15	c.23.5.3	107003
1ithA	141	45.22	a.1.1.2	15623
2gdjA	264	46.00	c.37.1.11	135018
1x9fB	145	46.26	a.1.1.2	114984
2ogbA	126	47.21		
1aorA	605	47.82	a.110.1.1,d.152.1.1	19042,41794
2h8fA	143	48.06	a.1.1.2	136239
1lvk	762	52.72		
2fzpA	144	52.84		
1vflA	356	54.83	c.1.9.1	120041
1eca	136	54.94		
2aa1A	144	55.45	a.1.1.2	126463
2d2mB	142	56.69		
1xb4A	202	57.20	a.4.5.54,a.4.5.54	121832,121833
2j01U	118	61.09		
2al3A	90	63.27	d.15.1.2	126957
1s6lA	212	64.12		
2zfoA	140	64.89		
1vehA	92	66.64	d.52.8.1	113635
1ubkS	267	67.62	e.19.1.1	88423
1v4xA	144	67.73	a.1.1.2	108363
1jpyA	137	68.52	g.17.1.6	67065
1wuiS	267	71.04	e.19.1.1	121290
2ofyA	86	73.73		
1mp9A	198	75.05	d.129.1.1,d.129.1.1	91385,91386
1e0gA	48	76.44	d.7.1.1	37325
3bomA	142	76.63		
2zfoB	142	76.82		
2oy9A	98	78.64		
1a4mA	349	79.12	c.1.9.1	29014
2fjrA	189	81.53		
1zupA	315	86.34	c.55.3.11	125681
1fx7A	230	86.76	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
1kbjA	412	87.36	c.1.4.1	72280
3b5mA	205	88.36		
1cg5B	141	88.90	a.1.1.2	15585