# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.1086	a.248.1.1	133507
1w7jA	795	6.378	b.34.3.1,c.37.1.9	120688,120689
1mvwA	840	7.224	i.15.1.1	79523
2bkhA	814	7.269		
2akaA	776	7.441		
1u3eM	174	7.656	d.4.1.3,d.285.1.1	107640,107641
1d0yA	761	9.730	b.34.3.1,c.37.1.9	24581,32178
1y6uA	70	11.54		
2d2mA	140	14.16		
1s69A	124	15.22	a.1.1.1	105305
1w9iA	770	16.14		
1dlwA	116	21.17	a.1.1.1	14982
1yhuB	144	22.34		
1f0nA	285	22.61	c.69.1.3	34636
3c8yA	574	23.51		
1idrA	136	24.36	a.1.1.1	62301
1y75B	118	25.37		
2v26A	784	25.73		
1tikA	213	26.23	c.23.5.3	107003
2nxoA	291	26.92		
2gwfB	134	29.48		
1r9lA	309	30.74	c.94.1.1	97262
1s6lA	212	31.46		
2ouwA	138	32.61		
2al3A	90	35.11	d.15.1.2	126957
2aa1A	144	39.31	a.1.1.2	126463
1lvk	762	40.62		
2j01U	118	41.19		
2gdjA	264	46.19	c.37.1.11	135018
1aorA	605	46.90	a.110.1.1,d.152.1.1	19042,41794
1gyzA	60	49.60	a.144.2.1	70793
1x9fB	145	58.24	a.1.1.2	114984
1xb4A	202	58.28	a.4.5.54,a.4.5.54	121832,121833
2ogbA	126	58.80		
3b5mA	205	59.14		
3bomA	142	59.76		
2h8fA	143	60.29	a.1.1.2	136239
1wuiS	267	60.86	e.19.1.1	121290
1ae7A	119	61.87	a.133.1.2	19553
2d2mB	142	62.11		
2fzpA	144	62.66		
1ubkS	267	64.60	e.19.1.1	88423
1v4xA	144	65.13	a.1.1.2	108363
2cfmA	561	67.33		
2zfoA	140	68.65		
2d5rB	116	69.50		
1fx7A	230	69.54	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
1vehA	92	70.59	d.52.8.1	113635
2oa4A	101	72.43		
1j6pA	418	74.23	b.92.1.4,c.1.9.9	77089,77090
2eqpA	50	76.06		
2oy9A	98	77.08		
1e0gA	48	77.19	d.7.1.1	37325
2nsvA	52	79.00		
2ofyA	86	79.16		
2qnuA	226	80.30		
2amxA	376	80.68	c.1.9.1	127024
1mp9A	198	81.57	d.129.1.1,d.129.1.1	91385,91386
1kbjA	412	83.97	c.1.4.1	72280
2ezhA	75	87.61	a.4.1.2	16029
2fjrA	189	88.35