# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.3546	a.248.1.1	133507
1y75B	118	15.92		
2d5rB	116	25.49		
3c8yA	574	25.86		
2gwfB	134	33.16		
1w7jA	795	39.24	b.34.3.1,c.37.1.9	120688,120689
2fzpA	144	39.31		
1u3eM	174	45.18	d.4.1.3,d.285.1.1	107640,107641
2z15A	130	47.14		
2pytA	133	49.96		
1aorA	605	52.65	a.110.1.1,d.152.1.1	19042,41794
2ogbA	126	57.79		
2qnuA	226	59.43		
1ae7A	119	61.50	a.133.1.2	19553
2j01U	118	62.46		
1mvwA	840	65.70	i.15.1.1	79523
1y6uA	70	67.65		
2akaA	776	69.48		
2d2mA	140	70.57		
1tikA	213	72.93	c.23.5.3	107003
1r9lA	309	76.48	c.94.1.1	97262
1yzbA	182	78.82		
2dlxA	153	82.25