# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.1444	a.248.1.1	133507
1mvwA	840	17.28	i.15.1.1	79523
1w7jA	795	18.66	b.34.3.1,c.37.1.9	120688,120689
3c8yA	574	18.92		
1y6uA	70	21.31		
1y75B	118	24.98		
2nxoA	291	25.04		
1u3eM	174	34.63	d.4.1.3,d.285.1.1	107640,107641
1ae7A	119	39.94	a.133.1.2	19553
1f0nA	285	41.95	c.69.1.3	34636
2akaA	776	43.58		
2gdjA	264	46.95	c.37.1.11	135018
2fjrA	189	48.63		
3cq5A	369	49.86		
1vflA	356	51.83	c.1.9.1	120041
2dlxA	153	52.24		
1dlwA	116	53.45	a.1.1.1	14982
1aorA	605	56.84	a.110.1.1,d.152.1.1	19042,41794
2amxA	376	56.88	c.1.9.1	127024
1s69A	124	57.13	a.1.1.1	105305
2v9cA	215	58.84		
1a4mA	349	58.94	c.1.9.1	29014
1h2eA	207	60.10	c.60.1.1	70857
1d0yA	761	61.43	b.34.3.1,c.37.1.9	24581,32178
2qnuA	226	62.44		
1s6lA	212	64.68		
1ypyA	184	64.73		
2qrvA	295	65.52		
1r9lA	309	70.12	c.94.1.1	97262
1kbjA	412	70.29	c.1.4.1	72280
2ib0A	170	70.46		
2fzpA	144	71.00		
2bkhA	814	71.14		
1tikA	213	71.85	c.23.5.3	107003
1idrA	136	72.39	a.1.1.1	62301
2gwfB	134	75.83		
2qebA	145	75.97		
1gyzA	60	81.70	a.144.2.1	70793
1smdA	496	81.74	b.71.1.1,c.1.8.1	27768,28755
2hc1A	291	81.81		
1a2aA	122	83.05	a.133.1.2	19540
1vapA	123	86.38	a.133.1.2	19548
1w9iA	770	86.82		
1yzbA	182	89.17