# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fi0A 81 0.000135 a.248.1.1 133507 2ooaA 52 0.4027 2dklA 85 0.4884 a.5.2.1 131555 1jb9A 316 1.152 b.43.4.2,c.25.1.1 62840,62841 1fnc 314 3.654 2qnuA 226 3.824 1etxA 98 5.058 a.4.1.12 18978 2bwbA 46 5.125 a.5.2.1 129329 1wr1B 58 5.879 a.5.2.1 121185 2b5oA 402 6.344 2in3A 216 6.860 1zupA 315 7.207 c.55.3.11 125681 2j01U 118 7.675 1ifyA 49 7.886 a.5.2.1 71207 1bx1A 314 8.826 b.43.4.2,c.25.1.1 25629,31519 1ogiA 303 9.316 b.43.4.2,c.25.1.1 92914,92915 2ofyA 86 9.457 2ezhA 75 10.15 a.4.1.2 16029 2rc5A 314 10.25 2bkhA 814 10.91 1k20A 310 15.23 c.107.1.1 68027 1z96A 40 15.31 2oo9A 46 17.07 2eggA 297 17.33 1fs7A 485 17.84 a.138.1.3 19691 1vejA 74 18.16 a.5.2.1 120020 2qsfX 171 18.41 3c9pA 123 18.74 2i57A 438 19.42 1fipA 98 19.85 a.4.1.12 18980 1ccwA 137 20.85 c.23.6.1 31238 1eudB 396 21.49 c.23.4.1,d.142.1.4 31150,41571 1vekA 84 21.58 a.5.2.1 113636 1zp4A 304 21.71 1vg5A 73 22.42 a.5.2.1 113640 1y6uA 70 22.61 2v26A 784 22.86 2g0wA 296 24.16 c.1.15.4 134503 2vpzA 765 24.65 2b5aA 77 25.02 a.35.1.3 127882 2qezA 455 25.82 1jr2A 286 27.46 c.113.1.1 67111 1k6kA 143 27.67 a.174.1.1 77274 3bnjA 485 27.90 2qtsA 438 28.86 2cp8A 54 28.91 a.5.2.1 130695 1rxdA 159 28.92 c.45.1.1 111959 2o1sA 621 29.53 1s6lA 212 29.69 1v38A 78 30.55 a.60.1.2 100280 1w34A 304 30.76 b.43.4.2,c.25.1.1 120620,120621 1zelA 298 31.26 1pbjA 125 31.45 d.37.1.1,d.37.1.1 94414,94415 1dxsA 80 31.64 a.60.1.2 17944 2rdzA 452 32.35 1vdlA 80 32.60 a.5.2.1 108528 1gx1A 160 33.20 d.79.5.1 70675 1p90A 145 34.69 c.55.5.2 94377 1b0xA 94 35.97 a.60.1.2 17933 1ixsA 62 39.81 a.5.1.1 76932 1m7sA 484 40.72 e.5.1.1 74574 1x24A 180 40.99 1jqlB 140 41.34 c.37.1.20 63234 1q02A 52 42.43 a.5.2.1 95490 1u3eM 174 42.64 d.4.1.3,d.285.1.1 107640,107641 1ig0A 319 42.80 b.82.6.1,c.100.1.1 62354,62355 1dv0A 47 45.62 a.5.2.1 16289 1w9iA 770 45.81 1g5tA 196 46.15 c.37.1.11 32366 2r0bA 154 46.60 2bl0B 145 46.91 1e0gA 48 50.37 d.7.1.1 37325 1zkpA 268 50.92 d.157.1.9 125205 1fndA 314 52.01 b.43.4.2,c.25.1.1 25626,31516 1xcbA 211 52.79 a.4.5.38,c.2.1.12 109552,109553 2qhoB 53 53.77 1iugA 352 54.22 c.67.1.3 90699 1zckA 154 54.57 1a8o 70 55.72 1qjcA 158 56.38 c.26.1.3 63328 1n0qA 93 57.38 k.37.1.1 79754 2imfA 203 58.41 1aihA 170 60.84 d.163.1.1 42149 1go2A 304 61.24 b.43.4.2,c.25.1.1 76243,76244 2d9sA 53 61.39 2ppxA 99 61.47 1m3qA 317 61.79 a.96.1.3,d.129.1.2 91184,91185 1u9lA 70 62.78 a.60.4.2 107751 2yrxA 451 64.20 2jhnA 295 64.24 2hdoA 209 65.85 c.108.1.6 136345 1ig3A 263 66.62 b.82.6.1,c.100.1.1 62358,62359 1m5yA 408 66.80 a.223.1.2,d.26.1.1,d.26.1.1 78664,78665,78666 1a8oA 70 67.77 a.28.3.1 16953 2f3nA 76 68.06 a.60.1.2 132885 2jgqA 233 69.26 3be4A 217 69.77 2pf5A 98 69.98 1e3jA 352 70.70 b.35.1.2,c.2.1.1 24765,29781 1y02A 120 71.41 a.140.2.1,g.50.1.1 116278,116279 1cvrA 435 71.69 b.1.18.12,c.17.1.2 21949,31006 1b4fA 82 71.79 a.60.1.2 17934 2z15A 130 72.77 1i1qB 192 73.24 c.23.16.1 61544 1e8cA 498 73.31 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2cobA 70 74.15 a.4.1.15 130673 2jabA 136 74.42 2nwlA 422 74.77 1wi9A 72 74.92 a.4.5.47 114663 1r9lA 309 75.42 c.94.1.1 97262 1bedA 181 75.56 c.47.1.13 90330 3b8bA 292 77.20 1uc8A 280 77.36 c.30.1.6,d.142.1.7 99165,99166 1r1tA 122 77.58 a.4.5.5 104769 1ezm 301 78.30 1bouA 139 79.56 a.88.1.1 18521 1d0yA 761 80.35 b.34.3.1,c.37.1.9 24581,32178 1dik 874 80.51 1d8wA 426 81.64 c.1.15.2 29394 1w7jA 795 81.84 b.34.3.1,c.37.1.9 120688,120689 1ujcA 161 82.75 2nlyA 245 83.55 c.6.2.7 138364 1m32A 366 84.51 c.67.1.3 78508 2f48A 555 84.81 c.89.1.1 132915 1fadA 99 86.01 a.77.1.2 18428 1tr8A 102 86.48 1vj0A 380 88.74 b.35.1.2,c.2.1.1 100786,100787 2bsaA 303 88.91 b.43.4.2,c.25.1.1 129078,129079 1xkfA 133 89.45 d.37.1.1,d.37.1.1 122077,122078