This file specifies which residues will be varied Column 2: Chain Column 4-7: sequential residue number Column 9-12: pdb residue number Column 14-18: id (described below) Column 21-40: amino acids to be used NATAA => use native amino acid ALLAA => all amino acids NATRO => native amino acid and rotamer PIKAA => select inividual amino acids POLAR => polar amino acids APOLA => apolar amino acids The following demo lines are in the proper format A 1 3 NATAA A 2 4 ALLAA A 3 6 NATRO A 4 7 NATAA B 5 1 PIKAA DFLM B 6 2 PIKAA HIL B 7 3 POLAR ------------------------------------------------- start A 1 3 NATAA Q A 2 4 NATAA K A 3 5 NATAA F A 4 6 NATAA T A 5 7 NATAA K A 6 8 NATAA D A 7 9 NATAA M A 8 10 NATAA T A 9 11 NATAA F A 10 12 NATAA A A 11 13 NATAA Q A 12 14 NATAA A A 13 15 NATAA L A 14 16 NATAA Q A 15 17 NATAA T A 16 18 NATAA H A 17 19 NATRO P A 18 20 NATAA G A 19 21 NATAA V A 20 22 NATAA A A 21 23 NATAA G A 22 24 NATAA V A 23 25 NATAA L A 24 26 NATAA R A 25 27 NATAA S A 26 28 NATAA Y A 27 29 NATAA N A 28 30 NATAA L A 29 31 NATAA G A 30 32 NATRO C A 31 33 NATAA I A 32 34 NATAA G A 33 35 NATRO C A 34 36 NATAA M A 35 37 NATAA G A 36 38 NATAA A A 37 39 NATAA Q A 38 40 NATAA N A 39 41 NATAA E A 40 42 NATAA S A 41 43 NATAA L A 42 44 NATAA E A 43 45 NATAA Q A 44 46 NATAA G A 45 47 NATAA A A 46 48 NATAA N A 47 49 NATAA A A 48 50 NATAA H A 49 51 NATAA G A 50 52 NATAA L A 51 53 NATAA N A 52 54 NATAA V A 53 55 NATAA E A 54 56 NATAA D A 55 57 NATAA I A 56 58 NATAA L A 57 59 NATAA R A 58 60 NATAA D A 59 61 NATAA L A 60 62 NATAA N A 61 63 NATAA A A 62 64 NATAA L A 63 65 NATAA A