PFRMAT RR TARGET TR469 AUTHOR 4008-1775-0004 REMARK From group SAM-TO6 under the direction of REMARK Kevin Karplus. REMARK Residue-residue contact predictions REMARK by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network. METHOD NN: con.aa7str2_7near3nsep5.47.data03.net METHOD Inputs may include separation and sequence length, METHOD e-value statistic based on mutual information values, METHOD a statistic based on propensity of residues in contact. METHOD Other inputs are distributions from alignments and METHOD secondary predictions from SAM-t04 and/or SAM-t06 of METHOD the University of California, Santa Cruz REMARK REMARK Starting column is 3 MODEL 1 QKFTKDMTFAQALQTHPGVAGVLRSYNLGCIGCMGAQNESLEQGANAHGL NVEDILRDLNALA 6 18 0 8 0.403309 6 21 0 8 0.456425 6 22 0 8 0.439159 6 24 0 8 0.443667 6 30 0 8 0.373758 6 32 0 8 0.485544 6 33 0 8 0.48703 6 34 0 8 0.463785 6 35 0 8 0.486479 6 36 0 8 0.447462 6 37 0 8 0.451057 6 38 0 8 0.400971 6 39 0 8 0.350404 6 40 0 8 0.392246 6 41 0 8 0.361797 7 17 0 8 0.472319 7 18 0 8 0.546731 7 20 0 8 0.389521 7 21 0 8 0.570322 7 22 0 8 0.585048 7 23 0 8 0.402037 7 24 0 8 0.646087 7 25 0 8 0.445897 7 27 0 8 0.374562 7 28 0 8 0.512769 7 30 0 8 0.43909 7 31 0 8 0.36361 7 32 0 8 0.534549 7 33 0 8 0.524338 7 34 0 8 0.49367 7 35 0 8 0.541001 7 36 0 8 0.491716 7 37 0 8 0.504479 7 38 0 8 0.478304 7 39 0 8 0.412593 7 40 0 8 0.488515 7 41 0 8 0.480711 7 42 0 8 0.370183 7 43 0 8 0.567204 7 45 0 8 0.461653 7 46 0 8 0.500993 7 49 0 8 0.458886 7 50 0 8 0.410757 7 52 0 8 0.353244 7 54 0 8 0.378356 7 57 0 8 0.449134 7 58 0 8 0.376974 7 60 0 8 0.398471 7 61 0 8 0.44628 8 18 0 8 0.352668 8 21 0 8 0.460277 8 22 0 8 0.414028 8 24 0 8 0.443513 8 32 0 8 0.46617 8 33 0 8 0.472058 8 34 0 8 0.453748 8 35 0 8 0.498136 8 36 0 8 0.45833 8 37 0 8 0.465531 8 38 0 8 0.423163 8 39 0 8 0.352845 8 40 0 8 0.397829 8 41 0 8 0.361204 8 43 0 8 0.359919 9 18 0 8 0.50241 9 21 0 8 0.601041 9 22 0 8 0.58012 9 24 0 8 0.659861 9 25 0 8 0.493573 9 28 0 8 0.408318 9 30 0 8 0.379739 9 32 0 8 0.533206 9 33 0 8 0.512289 9 34 0 8 0.465214 9 35 0 8 0.566091 9 36 0 8 0.489291 9 37 0 8 0.50813 9 38 0 8 0.492701 9 39 0 8 0.384277 9 40 0 8 0.470697 9 41 0 8 0.455256 9 43 0 8 0.580304 9 45 0 8 0.381264 9 46 0 8 0.527404 9 54 0 8 0.363728 9 57 0 8 0.563299 9 61 0 8 0.398307 10 21 0 8 0.491042 10 22 0 8 0.432056 10 24 0 8 0.478675 10 32 0 8 0.470314 10 33 0 8 0.46783 10 34 0 8 0.440499 10 35 0 8 0.509285 10 36 0 8 0.455726 10 37 0 8 0.467098 10 38 0 8 0.43138 10 40 0 8 0.392648 10 41 0 8 0.355979 10 43 0 8 0.381305 11 20 0 8 0.408113 11 21 0 8 0.789815 11 22 0 8 0.777497 11 23 0 8 0.474922 11 24 0 8 0.849571 11 25 0 8 0.802873 11 26 0 8 0.404902 11 27 0 8 0.370538 11 28 0 8 0.629662 11 30 0 8 0.540959 11 32 0 8 0.701139 11 33 0 8 0.643697 11 34 0 8 0.533315 11 35 0 8 0.728181 11 36 0 8 0.601763 11 37 0 8 0.632604 11 38 0 8 0.650572 11 39 0 8 0.4701 11 40 0 8 0.621445 11 41 0 8 0.631582 11 42 0 8 0.428812 11 43 0 8 0.789874 11 44 0 8 0.348908 11 45 0 8 0.563865 11 46 0 8 0.797939 11 47 0 8 0.623266 11 49 0 8 0.507666 11 50 0 8 0.50045 11 52 0 8 0.430214 11 54 0 8 0.550016 11 56 0 8 0.39298 11 57 0 8 0.821877 11 58 0 8 0.562366 11 60 0 8 0.45803 11 61 0 8 0.6526 12 21 0 8 0.767298 12 22 0 8 0.752743 12 23 0 8 0.502856 12 24 0 8 0.816705 12 25 0 8 0.660143 12 26 0 8 0.409455 12 27 0 8 0.433371 12 28 0 8 0.653589 12 29 0 8 0.36193 12 30 0 8 0.544124 12 31 0 8 0.37093 12 32 0 8 0.646087 12 33 0 8 0.589823 12 34 0 8 0.529403 12 35 0 8 0.64477 12 36 0 8 0.547049 12 37 0 8 0.586471 12 38 0 8 0.592817 12 39 0 8 0.47195 12 40 0 8 0.600646 12 41 0 8 0.604461 12 42 0 8 0.4406 12 43 0 8 0.741291 12 44 0 8 0.37857 12 45 0 8 0.564853 12 46 0 8 0.679316 12 47 0 8 0.465336 12 49 0 8 0.533806 12 50 0 8 0.532614 12 52 0 8 0.432867 12 54 0 8 0.524637 12 56 0 8 0.392966 12 57 0 8 0.691144 12 58 0 8 0.511481 12 60 0 8 0.471701 12 61 0 8 0.568477 13 22 0 8 0.405069 13 24 0 8 0.470132 13 32 0 8 0.39887 13 33 0 8 0.369042 13 35 0 8 0.402955 13 37 0 8 0.357446 13 43 0 8 0.381084 13 46 0 8 0.367965 14 23 0 8 0.350639 14 24 0 8 0.768938 14 25 0 8 0.759816 14 28 0 8 0.526259 14 30 0 8 0.432911 14 32 0 8 0.571742 14 33 0 8 0.475473 14 35 0 8 0.58229 14 36 0 8 0.424972 14 37 0 8 0.453406 14 38 0 8 0.485411 14 40 0 8 0.45179 14 41 0 8 0.492513 14 43 0 8 0.704133 14 45 0 8 0.446198 14 46 0 8 0.753724 14 47 0 8 0.599564 14 49 0 8 0.399987 14 50 0 8 0.440445 14 52 0 8 0.355263 14 54 0 8 0.495425 14 57 0 8 0.758673 14 58 0 8 0.494998 14 60 0 8 0.389376 14 61 0 8 0.610472 15 24 0 8 0.88748 15 25 0 8 0.870271 15 26 0 8 0.553696 15 27 0 8 0.515089 15 28 0 8 0.787068 15 29 0 8 0.442042 15 30 0 8 0.748117 15 31 0 8 0.366868 15 32 0 8 0.792258 15 33 0 8 0.675628 15 34 0 8 0.494368 15 35 0 8 0.758964 15 36 0 8 0.585316 15 37 0 8 0.635228 15 38 0 8 0.677878 15 39 0 8 0.471584 15 40 0 8 0.672718 15 41 0 8 0.703754 15 42 0 8 0.465327 15 43 0 8 0.814611 15 44 0 8 0.395601 15 45 0 8 0.603803 15 46 0 8 0.818607 15 47 0 8 0.717895 15 49 0 8 0.590198 15 50 0 8 0.67904 15 52 0 8 0.581691 15 54 0 8 0.613353 15 57 0 8 0.761344 15 58 0 8 0.586942 15 60 0 8 0.487307 15 61 0 8 0.769858 16 25 0 8 0.452104 16 27 0 8 0.378588 16 28 0 8 0.616184 16 29 0 8 0.352025 16 30 0 8 0.544611 16 32 0 8 0.579191 16 33 0 8 0.473372 16 34 0 8 0.410861 16 35 0 8 0.51255 16 36 0 8 0.406476 16 37 0 8 0.443251 16 38 0 8 0.438172 16 40 0 8 0.454284 16 41 0 8 0.461964 16 43 0 8 0.562304 16 45 0 8 0.403061 16 46 0 8 0.455145 16 49 0 8 0.438963 16 50 0 8 0.51305 16 52 0 8 0.378144 16 54 0 8 0.410046 16 57 0 8 0.371441 16 61 0 8 0.455215 17 28 0 8 0.389153 17 32 0 8 0.425885 17 33 0 8 0.370664 17 35 0 8 0.413247 17 37 0 8 0.36364 17 38 0 8 0.355894 17 40 0 8 0.356529 17 41 0 8 0.363566 17 43 0 8 0.482876 17 46 0 8 0.413086 17 54 0 8 0.37351 17 57 0 8 0.383076 17 61 0 8 0.356875 18 28 0 8 0.490653 18 30 0 8 0.412194 18 32 0 8 0.509999 18 33 0 8 0.430458 18 34 0 8 0.352313 18 35 0 8 0.498556 18 36 0 8 0.388677 18 37 0 8 0.421215 18 38 0 8 0.43639 18 40 0 8 0.438126 18 41 0 8 0.462195 18 43 0 8 0.623889 18 45 0 8 0.423386 18 46 0 8 0.547765 18 47 0 8 0.369002 18 49 0 8 0.372814 18 50 0 8 0.373756 18 54 0 8 0.472074 18 57 0 8 0.559074 18 58 0 8 0.401785 18 60 0 8 0.373902 18 61 0 8 0.455456 19 28 0 8 0.388515 19 32 0 8 0.435827 19 33 0 8 0.384962 19 34 0 8 0.35774 19 35 0 8 0.418725 19 36 0 8 0.358294 19 37 0 8 0.379598 19 38 0 8 0.356443 19 40 0 8 0.360439 19 41 0 8 0.351396 19 43 0 8 0.411198 21 30 0 8 0.356575 21 32 0 8 0.499428 21 33 0 8 0.452466 21 34 0 8 0.395522 21 35 0 8 0.50951 21 36 0 8 0.420846 21 37 0 8 0.439651 21 38 0 8 0.435106 21 40 0 8 0.407499 21 41 0 8 0.408787 21 43 0 8 0.565471 21 45 0 8 0.379342 21 46 0 8 0.527932 21 54 0 8 0.40362 21 57 0 8 0.551052 21 61 0 8 0.402401 22 31 0 8 0.373328 22 32 0 8 0.712585 22 33 0 8 0.630787 22 34 0 8 0.527189 22 35 0 8 0.697505 22 36 0 8 0.567921 22 37 0 8 0.609777 22 38 0 8 0.637458 22 39 0 8 0.483712 22 40 0 8 0.633474 22 41 0 8 0.650823 22 42 0 8 0.457843 22 43 0 8 0.785331 22 44 0 8 0.402122 22 45 0 8 0.589451 22 46 0 8 0.720655 22 47 0 8 0.538594 22 49 0 8 0.523755 22 50 0 8 0.527505 22 52 0 8 0.466396 22 54 0 8 0.608297 22 56 0 8 0.41327 22 57 0 8 0.744688 22 58 0 8 0.553923 22 60 0 8 0.498942 22 61 0 8 0.60544 23 32 0 8 0.442581 23 33 0 8 0.394134 23 34 0 8 0.354432 23 35 0 8 0.428116 23 36 0 8 0.359787 23 37 0 8 0.372328 23 43 0 8 0.390296 23 46 0 8 0.35315 24 33 0 8 0.491247 24 34 0 8 0.376886 24 35 0 8 0.571221 24 36 0 8 0.428795 24 37 0 8 0.457052 24 38 0 8 0.479907 24 40 0 8 0.45125 24 41 0 8 0.481127 24 43 0 8 0.679374 24 45 0 8 0.453666 24 46 0 8 0.682752 24 47 0 8 0.499973 24 49 0 8 0.406199 24 50 0 8 0.430207 24 54 0 8 0.505142 24 57 0 8 0.69975 24 58 0 8 0.463757 24 60 0 8 0.40107 24 61 0 8 0.54357 25 34 0 8 0.541771 25 35 0 8 0.792242 25 36 0 8 0.631091 25 37 0 8 0.659228 25 38 0 8 0.688379 25 39 0 8 0.461357 25 40 0 8 0.64616 25 41 0 8 0.675862 25 42 0 8 0.432955 25 43 0 8 0.823324 25 44 0 8 0.372943 25 45 0 8 0.581529 25 46 0 8 0.841282 25 47 0 8 0.733903 25 49 0 8 0.526175 25 50 0 8 0.582284 25 52 0 8 0.507751 25 54 0 8 0.600722 25 57 0 8 0.812449 25 58 0 8 0.592024 25 60 0 8 0.468096 25 61 0 8 0.729328 26 35 0 8 0.739345 26 36 0 8 0.586637 26 37 0 8 0.62836 26 38 0 8 0.648816 26 39 0 8 0.491611 26 40 0 8 0.64846 26 41 0 8 0.666399 26 42 0 8 0.44278 26 43 0 8 0.761226 26 44 0 8 0.374124 26 45 0 8 0.552372 26 46 0 8 0.633125 26 47 0 8 0.469523 26 49 0 8 0.56111 26 50 0 8 0.629706 26 52 0 8 0.536375 26 54 0 8 0.595095 26 57 0 8 0.580122 26 58 0 8 0.467859 26 60 0 8 0.475406 26 61 0 8 0.611743 27 36 0 8 0.415838 27 37 0 8 0.434174 27 38 0 8 0.411828 27 40 0 8 0.403508 27 41 0 8 0.401605 27 43 0 8 0.470799 27 46 0 8 0.355711 27 50 0 8 0.35091 27 54 0 8 0.361867 27 61 0 8 0.355958 28 37 0 8 0.584718 28 38 0 8 0.606447 28 39 0 8 0.458598 28 40 0 8 0.603421 28 41 0 8 0.615538 28 42 0 8 0.415767 28 43 0 8 0.704903 28 45 0 8 0.498003 28 46 0 8 0.579056 28 47 0 8 0.424946 28 49 0 8 0.457126 28 50 0 8 0.476504 28 52 0 8 0.446788 28 54 0 8 0.606515 28 56 0 8 0.37919 28 57 0 8 0.607507 28 58 0 8 0.448145 28 60 0 8 0.450639 28 61 0 8 0.533406 29 38 0 8 0.486494 29 39 0 8 0.397716 29 40 0 8 0.455343 29 41 0 8 0.422275 29 43 0 8 0.42663 30 39 0 8 0.517953 30 40 0 8 0.628395 30 41 0 8 0.625579 30 42 0 8 0.427844 30 43 0 8 0.736791 30 45 0 8 0.488937 30 46 0 8 0.615988 30 47 0 8 0.4241 30 49 0 8 0.459417 30 50 0 8 0.409733 30 52 0 8 0.41129 30 54 0 8 0.518654 30 56 0 8 0.360384 30 57 0 8 0.622232 30 58 0 8 0.414724 30 60 0 8 0.401979 30 61 0 8 0.523138 31 40 0 8 0.539387 31 41 0 8 0.4906 31 42 0 8 0.363509 31 43 0 8 0.451861 31 54 0 8 0.355375 32 41 0 8 0.637111 32 42 0 8 0.467729 32 43 0 8 0.749221 32 44 0 8 0.364277 32 45 0 8 0.506303 32 46 0 8 0.679591 32 47 0 8 0.489076 32 49 0 8 0.489709 32 50 0 8 0.392817 32 52 0 8 0.404738 32 54 0 8 0.481832 32 56 0 8 0.395766 32 57 0 8 0.708497 32 58 0 8 0.442169 32 60 0 8 0.42351 32 61 0 8 0.556892 33 42 0 8 0.577826 33 43 0 8 0.811273 33 44 0 8 0.449953 33 45 0 8 0.575752 33 46 0 8 0.735876 33 47 0 8 0.54522 33 49 0 8 0.54527 33 50 0 8 0.447954 33 52 0 8 0.481733 33 53 0 8 0.414674 33 54 0 8 0.53035 33 56 0 8 0.476205 33 57 0 8 0.782982 33 58 0 8 0.500734 33 60 0 8 0.466317 33 61 0 8 0.600037 34 43 0 8 0.618429 34 45 0 8 0.426485 34 46 0 8 0.491338 34 49 0 8 0.389064 34 52 0 8 0.379882 34 53 0 8 0.358972 34 54 0 8 0.422305 34 56 0 8 0.404998 34 57 0 8 0.527601 34 61 0 8 0.363042 35 44 0 8 0.432837 35 45 0 8 0.573312 35 46 0 8 0.759629 35 47 0 8 0.571082 35 49 0 8 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0.444832 40 50 0 8 0.408098 40 52 0 8 0.384742 40 54 0 8 0.545488 40 56 0 8 0.441043 40 57 0 8 0.713379 40 58 0 8 0.438802 40 60 0 8 0.397948 40 61 0 8 0.484164 41 50 0 8 0.53739 41 52 0 8 0.471901 41 54 0 8 0.646833 41 56 0 8 0.486126 41 57 0 8 0.795216 41 58 0 8 0.552141 41 60 0 8 0.491921 41 61 0 8 0.595694 42 54 0 8 0.394771 42 57 0 8 0.444099 43 52 0 8 0.646514 43 54 0 8 0.803425 43 56 0 8 0.572991 43 57 0 8 0.872916 43 58 0 8 0.716114 43 60 0 8 0.626413 43 61 0 8 0.753461 44 54 0 8 0.639172 44 56 0 8 0.427101 44 57 0 8 0.672645 44 58 0 8 0.490697 44 60 0 8 0.460441 44 61 0 8 0.549023 45 54 0 8 0.551784 45 57 0 8 0.612633 45 58 0 8 0.433651 45 60 0 8 0.394676 45 61 0 8 0.484589 46 56 0 8 0.426647 46 57 0 8 0.870017 46 58 0 8 0.660365 46 60 0 8 0.533333 46 61 0 8 0.751576 47 56 0 8 0.626228 47 57 0 8 0.905177 47 58 0 8 0.75918 47 60 0 8 0.685666 47 61 0 8 0.867942 47 62 0 8 0.380967 48 57 0 8 0.654561 48 58 0 8 0.471103 48 60 0 8 0.506395 48 61 0 8 0.633041 49 58 0 8 0.542739 49 60 0 8 0.52305 49 61 0 8 0.667294 50 60 0 8 0.469527 50 61 0 8 0.604652 52 61 0 8 0.65597 END