PFRMAT RR TARGET TR469 AUTHOR 4008-1775-0004 REMARK From group SAM-TO6 under the direction of REMARK Kevin Karplus. REMARK Residue-residue contact predictions REMARK by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network. METHOD NN: con.aa5str2_5near5nsep5.entmi_epplccrr.th62.17.730_47.net METHOD Inputs may include separation and sequence length, METHOD e-value statistic based on mutual information values, METHOD a statistic based on propensity of residues in contact. METHOD Other inputs are distributions from alignments and METHOD secondary predictions from SAM-t04 and/or SAM-t06 of METHOD the University of California, Santa Cruz REMARK REMARK Starting column is 3 MODEL 1 QKFTKDMTFAQALQTHPGVAGVLRSYNLGCIGCMGAQNESLEQGANAHGL NVEDILRDLNALA 8 20 0 8 0.0142102 8 23 0 8 0.0191556 8 24 0 8 0.0320835 8 26 0 8 0.0117046 8 32 0 8 0.131368 8 34 0 8 0.0787757 8 35 0 8 0.110224 8 36 0 8 0.0508299 8 37 0 8 0.0426952 8 38 0 8 0.0535145 8 39 0 8 0.0288993 8 40 0 8 0.0289393 8 41 0 8 0.0424553 8 42 0 8 0.0397644 8 43 0 8 0.0361632 9 19 0 8 0.0195199 9 20 0 8 0.0153641 9 22 0 8 0.0437794 9 23 0 8 0.0189243 9 24 0 8 0.0461424 9 25 0 8 0.0546966 9 26 0 8 0.0164657 9 27 0 8 0.010066 9 29 0 8 0.0463806 9 30 0 8 0.0468731 9 32 0 8 0.152965 9 33 0 8 0.0764166 9 34 0 8 0.0515775 9 35 0 8 0.12395 9 36 0 8 0.0457707 9 37 0 8 0.0512636 9 38 0 8 0.044835 9 39 0 8 0.0349424 9 40 0 8 0.0398764 9 41 0 8 0.071558 9 42 0 8 0.0298336 9 43 0 8 0.110463 9 44 0 8 0.0226818 9 45 0 8 0.0158515 9 47 0 8 0.0493448 9 48 0 8 0.0122233 9 51 0 8 0.0317096 9 52 0 8 0.0323761 9 54 0 8 0.0871144 9 56 0 8 0.019514 9 59 0 8 2.98016e-15 9 60 0 8 0.016162 9 62 0 8 0.0572373 9 63 0 8 1.75405e-16 10 20 0 8 0.0119378 10 23 0 8 0.0166432 10 24 0 8 0.0408771 10 26 0 8 0.00974185 10 34 0 8 0.0313391 10 35 0 8 0.0747181 10 36 0 8 0.0314652 10 37 0 8 0.0420101 10 38 0 8 0.047792 10 39 0 8 0.0286215 10 40 0 8 0.0351689 10 41 0 8 0.036331 10 42 0 8 0.0244092 10 43 0 8 0.0499383 10 45 0 8 0.0130753 11 20 0 8 0.0270696 11 23 0 8 0.0753966 11 24 0 8 0.269604 11 26 0 8 0.0858893 11 27 0 8 0.0145311 11 30 0 8 0.0918336 11 32 0 8 0.20327 11 34 0 8 0.0800797 11 35 0 8 0.188611 11 36 0 8 0.100302 11 37 0 8 0.141245 11 38 0 8 0.0792079 11 39 0 8 0.0817728 11 40 0 8 0.105733 11 41 0 8 0.172702 11 42 0 8 0.0786123 11 43 0 8 0.20881 11 45 0 8 0.0564789 11 47 0 8 0.160035 11 48 0 8 0.0446491 11 56 0 8 0.0302952 11 59 0 8 0.000174671 11 63 0 8 0.0016553 12 23 0 8 0.0238925 12 24 0 8 0.044384 12 26 0 8 0.0171308 12 34 0 8 0.0350701 12 35 0 8 0.0710021 12 36 0 8 0.0780656 12 37 0 8 0.0706382 12 38 0 8 0.049735 12 39 0 8 0.0334605 12 40 0 8 0.0677365 12 42 0 8 0.0352412 12 43 0 8 0.0602454 12 45 0 8 0.0250286 13 22 0 8 0.0135465 13 23 0 8 0.0114029 13 24 0 8 0.025892 13 25 0 8 0.0133867 13 26 0 8 0.0066956 13 27 0 8 0.00788034 13 28 0 8 0.014941 13 29 0 8 0.018827 13 30 0 8 0.0216753 13 32 0 8 0.0377617 13 34 0 8 0.0180758 13 35 0 8 0.0290044 13 36 0 8 0.0160007 13 37 0 8 0.0215439 13 38 0 8 0.0153402 13 39 0 8 0.0113382 13 40 0 8 0.0115165 13 41 0 8 0.0162787 13 42 0 8 0.0169032 13 43 0 8 0.0219088 13 44 0 8 0.0116621 13 45 0 8 0.00944153 13 46 0 8 0.0215289 13 47 0 8 0.0172003 13 48 0 8 0.00516413 13 49 0 8 0.00867112 13 51 0 8 0.0092947 13 52 0 8 0.0117389 13 54 0 8 0.0238097 13 56 0 8 0.00989828 13 58 0 8 0.0167949 13 60 0 8 0.00949016 13 62 0 8 0.0125598 14 23 0 8 0.0229188 14 24 0 8 0.194394 14 25 0 8 0.224424 14 26 0 8 0.0331111 14 27 0 8 0.014807 14 28 0 8 0.0939275 14 29 0 8 0.0375748 14 30 0 8 0.0714859 14 31 0 8 0.0437019 14 32 0 8 0.145439 14 33 0 8 0.117714 14 34 0 8 0.0516496 14 35 0 8 0.134797 14 36 0 8 0.0553096 14 37 0 8 0.0840687 14 38 0 8 0.0583434 14 39 0 8 0.0414579 14 40 0 8 0.0393718 14 41 0 8 0.060918 14 42 0 8 0.068014 14 43 0 8 0.421172 14 44 0 8 0.0390329 14 45 0 8 0.0369028 14 46 0 8 0.163025 14 47 0 8 0.117368 14 48 0 8 0.0185244 14 49 0 8 0.0389156 14 51 0 8 0.0226425 14 52 0 8 0.0582895 14 54 0 8 0.0749845 14 56 0 8 0.0309391 14 58 0 8 0.0830588 14 59 0 8 0.00424053 14 60 0 8 0.0252692 14 62 0 8 0.0343513 14 63 0 8 0.00736353 15 24 0 8 0.285624 15 26 0 8 0.0700394 15 34 0 8 0.074525 15 35 0 8 0.160724 15 37 0 8 0.115237 15 39 0 8 0.0699247 15 45 0 8 0.0730166 15 48 0 8 0.0471833 16 25 0 8 0.0246046 16 26 0 8 0.0199942 16 27 0 8 0.0116868 16 30 0 8 0.0249213 16 32 0 8 0.0650848 16 34 0 8 0.028282 16 35 0 8 0.0485786 16 37 0 8 0.0534493 16 38 0 8 0.0431425 16 39 0 8 0.0267111 16 40 0 8 0.0371021 16 42 0 8 0.0260313 16 43 0 8 0.0457175 16 45 0 8 0.0247272 16 47 0 8 0.0393086 16 48 0 8 0.0232455 16 49 0 8 0.0275783 16 51 0 8 0.0158054 16 52 0 8 0.0210286 16 54 0 8 0.0522119 16 56 0 8 0.0309169 16 60 0 8 0.0306916 16 62 0 8 0.0287093 17 26 0 8 0.00913825 17 27 0 8 0.00703719 17 28 0 8 0.0198817 17 29 0 8 0.0198395 17 30 0 8 0.0157364 17 31 0 8 0.0320553 17 32 0 8 0.0494946 17 33 0 8 0.0391507 17 34 0 8 0.0204478 17 35 0 8 0.0369019 17 36 0 8 0.0258714 17 37 0 8 0.0313543 17 38 0 8 0.0213399 17 39 0 8 0.0213792 17 40 0 8 0.0334751 17 41 0 8 0.0204341 17 42 0 8 0.0173731 17 43 0 8 0.0330145 17 44 0 8 0.0121365 17 45 0 8 0.0165531 17 46 0 8 0.0328954 17 47 0 8 0.0253752 17 48 0 8 0.00982606 17 49 0 8 0.0205676 17 51 0 8 0.0100356 17 52 0 8 0.0210803 17 54 0 8 0.0386625 17 56 0 8 0.0194818 17 60 0 8 0.0136272 17 62 0 8 0.0135718 18 27 0 8 0.0132252 18 29 0 8 0.0417858 18 30 0 8 0.0409489 18 31 0 8 0.0689305 18 32 0 8 0.095006 18 34 0 8 0.0397581 18 35 0 8 0.0763434 18 36 0 8 0.0741422 18 37 0 8 0.0914937 18 38 0 8 0.0353455 18 39 0 8 0.046587 18 40 0 8 0.0845832 18 42 0 8 0.0360739 18 43 0 8 0.0706635 18 45 0 8 0.0324867 18 47 0 8 0.101737 18 48 0 8 0.0131709 18 51 0 8 0.0198 18 52 0 8 0.0270732 18 54 0 8 0.0841483 18 56 0 8 0.0277049 18 59 0 8 3.82191e-05 18 63 0 8 1.33038e-06 19 30 0 8 0.0314568 19 34 0 8 0.0368037 19 35 0 8 0.0909386 19 37 0 8 0.0264545 19 39 0 8 0.0158979 19 40 0 8 0.0223247 19 42 0 8 0.0235785 19 43 0 8 0.0520481 19 45 0 8 0.016672 19 48 0 8 0.010109 19 56 0 8 0.0187375 20 30 0 8 0.0135322 20 32 0 8 0.0299978 20 34 0 8 0.0160468 20 35 0 8 0.0227674 20 36 0 8 0.0165453 20 37 0 8 0.0224422 20 38 0 8 0.0138854 20 39 0 8 0.0114716 20 40 0 8 0.0169379 20 42 0 8 0.0143097 20 43 0 8 0.0185491 20 45 0 8 0.00893032 20 47 0 8 0.0154756 20 48 0 8 0.00623677 20 49 0 8 0.0125349 20 51 0 8 0.011159 20 52 0 8 0.0182102 20 56 0 8 0.0173143 20 60 0 8 0.0116668 20 62 0 8 0.0116939 21 30 0 8 0.0254957 21 34 0 8 0.0296419 21 35 0 8 0.0676238 21 36 0 8 0.0304586 21 37 0 8 0.0421644 21 38 0 8 0.0312095 21 39 0 8 0.0317791 21 40 0 8 0.0508494 21 42 0 8 0.0237136 21 43 0 8 0.101383 21 45 0 8 0.0235338 23 32 0 8 0.0273803 23 34 0 8 0.0150075 23 35 0 8 0.0219259 23 36 0 8 0.0144363 23 37 0 8 0.0186255 23 38 0 8 0.0116315 23 39 0 8 0.0127657 23 40 0 8 0.0173206 23 42 0 8 0.0136183 23 43 0 8 0.0232594 23 45 0 8 0.0110524 23 47 0 8 0.020835 23 48 0 8 0.0111658 23 56 0 8 0.0168705 23 59 0 8 0.0031663 23 63 0 8 0.00351185 24 33 0 8 0.0813704 24 34 0 8 0.0344763 24 35 0 8 0.102759 24 36 0 8 0.0490798 24 37 0 8 0.0815237 24 38 0 8 0.0755789 24 39 0 8 0.0351387 24 40 0 8 0.0894815 24 41 0 8 0.048717 24 42 0 8 0.0275312 24 43 0 8 0.2501 24 44 0 8 0.0233111 24 45 0 8 0.019634 24 46 0 8 0.225116 24 47 0 8 0.115352 24 48 0 8 0.0147418 24 49 0 8 0.0684241 24 51 0 8 0.0174795 24 52 0 8 0.0464113 24 54 0 8 0.076915 24 56 0 8 0.0254981 24 58 0 8 0.0783496 24 59 0 8 0.00375386 24 60 0 8 0.0418385 24 62 0 8 0.0331183 24 63 0 8 0.00460014 25 34 0 8 0.069837 25 35 0 8 0.207575 25 36 0 8 0.0687734 25 37 0 8 0.116773 25 38 0 8 0.0867615 25 39 0 8 0.208012 25 45 0 8 0.112938 25 48 0 8 0.0404472 26 35 0 8 0.0870231 26 36 0 8 0.0804101 26 37 0 8 0.0996254 26 38 0 8 0.0478179 26 39 0 8 0.0614751 26 40 0 8 0.099993 26 42 0 8 0.0447152 26 43 0 8 0.222727 26 45 0 8 0.0756372 26 47 0 8 0.161306 26 48 0 8 0.0404648 26 49 0 8 0.0927033 26 51 0 8 0.0294681 26 52 0 8 0.0409527 26 56 0 8 0.0335666 26 59 0 8 0.00802772 26 60 0 8 0.0430388 26 62 0 8 0.0677844 26 63 0 8 0.00753215 27 36 0 8 0.0190177 27 37 0 8 0.0214534 27 38 0 8 0.0190123 27 39 0 8 0.0133048 27 40 0 8 0.0238754 27 41 0 8 0.0215067 27 42 0 8 0.0143042 27 43 0 8 0.0271821 27 44 0 8 0.0117454 27 45 0 8 0.0220212 27 46 0 8 0.0416591 27 47 0 8 0.0232399 27 48 0 8 0.00839708 27 49 0 8 0.0167947 27 51 0 8 0.0110112 27 52 0 8 0.0146878 27 54 0 8 0.0414798 27 56 0 8 0.0178203 27 60 0 8 0.0459949 27 62 0 8 0.0165334 28 37 0 8 0.0485322 28 38 0 8 0.044078 28 39 0 8 0.0328116 28 40 0 8 0.0437658 28 41 0 8 0.0385672 28 42 0 8 0.0300535 28 43 0 8 0.058935 28 44 0 8 0.0260825 28 45 0 8 0.0338136 28 46 0 8 0.104382 28 47 0 8 0.0383005 28 48 0 8 0.028303 28 49 0 8 0.0402896 28 51 0 8 0.0268337 28 52 0 8 0.0365324 28 54 0 8 0.0652828 28 56 0 8 0.0348941 28 59 0 8 0.00246372 28 60 0 8 0.0941174 28 62 0 8 0.0254282 28 63 0 8 0.00564292 29 38 0 8 0.0534227 29 39 0 8 0.0264186 29 40 0 8 0.0727571 29 42 0 8 0.0309 29 43 0 8 0.0469183 29 45 0 8 0.0213066 29 48 0 8 0.0146144 29 52 0 8 0.0283035 29 56 0 8 0.0345203 29 63 0 8 5.23074e-35 30 39 0 8 0.0393622 30 40 0 8 0.0683133 30 41 0 8 0.0507568 30 42 0 8 0.0451938 30 43 0 8 0.0816287 30 44 0 8 0.0253541 30 45 0 8 0.0304638 30 47 0 8 0.0473475 30 48 0 8 0.0137862 30 49 0 8 0.0307382 30 51 0 8 0.0691909 30 52 0 8 0.0633476 30 54 0 8 0.0874743 30 56 0 8 0.0356492 30 58 0 8 0.0339425 30 59 0 8 1.74688e-07 30 60 0 8 0.0272572 30 62 0 8 0.0249401 30 63 0 8 3.90929e-06 31 40 0 8 0.0508915 31 41 0 8 0.0676846 31 42 0 8 0.0209082 31 43 0 8 0.0533725 31 45 0 8 0.0189771 32 41 0 8 0.192205 32 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8 0.0420292 35 62 0 8 0.0590091 35 63 0 8 1.00505e-06 36 45 0 8 0.0406614 36 47 0 8 0.060971 36 48 0 8 0.0159534 36 51 0 8 0.0503311 36 54 0 8 0.115795 36 55 0 8 0.0283104 36 56 0 8 0.0324683 36 58 0 8 0.0368773 36 59 0 8 5.08535e-20 36 63 0 8 2.08643e-12 37 46 0 8 0.167205 37 47 0 8 0.0513459 37 48 0 8 0.0253253 37 49 0 8 0.0683419 37 51 0 8 0.042924 37 52 0 8 0.0476671 37 54 0 8 0.147407 37 55 0 8 0.0318616 37 56 0 8 0.0362593 37 58 0 8 0.0432759 37 59 0 8 5.64295e-26 37 60 0 8 0.041636 37 62 0 8 0.0554053 37 63 0 8 5.43733e-28 38 47 0 8 0.0625088 38 48 0 8 0.0124022 38 49 0 8 0.0329847 38 51 0 8 0.0455158 38 52 0 8 0.0395459 38 54 0 8 0.112439 38 55 0 8 0.0249832 38 56 0 8 0.0297241 38 58 0 8 0.0431568 38 59 0 8 3.47242e-18 38 60 0 8 0.0483439 38 62 0 8 0.0341584 38 63 0 8 1.48281e-07 39 48 0 8 0.0115941 39 49 0 8 0.0249055 39 51 0 8 0.041478 39 52 0 8 0.0392823 39 54 0 8 0.111353 39 55 0 8 0.0157227 39 56 0 8 0.0289251 39 58 0 8 0.0327147 39 59 0 8 3.0888e-36 39 60 0 8 0.0250707 39 62 0 8 0.0324468 39 63 0 8 6.3916e-20 40 49 0 8 0.0580778 40 51 0 8 0.0339781 40 52 0 8 0.0361634 40 54 0 8 0.127733 40 55 0 8 0.0171741 40 56 0 8 0.033966 40 58 0 8 0.0502851 40 59 0 8 5.91374e-18 40 60 0 8 0.0415007 40 62 0 8 0.0516857 40 63 0 8 1.75183e-15 41 51 0 8 0.040115 41 54 0 8 0.155011 41 56 0 8 0.0183785 41 58 0 8 0.0460795 41 59 0 8 0.000296951 41 60 0 8 0.0186897 41 63 0 8 7.1372e-05 42 51 0 8 0.0301436 42 52 0 8 0.0283471 42 54 0 8 0.0608654 42 56 0 8 0.0163326 42 58 0 8 0.0386086 42 59 0 8 2.0404e-33 42 60 0 8 0.0147153 42 62 0 8 0.0187959 42 63 0 8 1.17914e-13 43 52 0 8 0.0679542 43 54 0 8 0.258216 43 56 0 8 0.0268138 43 58 0 8 0.148037 43 59 0 8 0.00431775 43 60 0 8 0.034191 43 62 0 8 0.0625396 43 63 0 8 0.0054889 44 56 0 8 0.0187098 44 59 0 8 4.35769e-08 45 54 0 8 0.0730174 45 56 0 8 0.016001 45 58 0 8 0.0317242 45 59 0 8 1.71481e-06 45 60 0 8 0.0134086 45 62 0 8 0.0144079 45 63 0 8 0.00130119 46 56 0 8 0.0240343 46 58 0 8 0.0884892 46 59 0 8 0.00559326 46 60 0 8 0.0566034 46 62 0 8 0.0422756 46 63 0 8 0.00506819 47 56 0 8 0.0323864 47 59 0 8 0.0107299 47 60 0 8 0.0495742 47 62 0 8 0.0627045 47 63 0 8 0.00733322 48 58 0 8 0.065912 48 59 0 8 2.49101e-15 48 60 0 8 0.0230809 48 62 0 8 0.0220129 48 63 0 8 7.74582e-11 49 58 0 8 0.0486991 49 59 0 8 0.00500071 49 60 0 8 0.0324822 49 62 0 8 0.0950569 49 63 0 8 0.00350011 50 59 0 8 0.00470854 50 60 0 8 0.0218025 50 62 0 8 0.0355242 50 63 0 8 0.00707694 51 60 0 8 0.0122207 51 62 0 8 0.0226848 52 62 0 8 0.00659897 52 63 0 8 1.00862e-06 54 63 0 8 4.73048e-14 END