PFRMAT RR TARGET TR469 AUTHOR 4008-1775-0004 REMARK From group SAM-TO6 under the direction of REMARK Kevin Karplus. REMARK Residue-residue contact predictions REMARK by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network. METHOD NN: con.aa5str2_5near5nsep5.entmi_epplcc.th62.47.net METHOD Inputs may include separation and sequence length, METHOD e-value statistic based on mutual information values, METHOD a statistic based on propensity of residues in contact. METHOD Other inputs are distributions from alignments and METHOD secondary predictions from SAM-t04 and/or SAM-t06 of METHOD the University of California, Santa Cruz REMARK REMARK Starting column is 3 MODEL 1 QKFTKDMTFAQALQTHPGVAGVLRSYNLGCIGCMGAQNESLEQGANAHGL NVEDILRDLNALA 5 14 0 8 0.700405 5 15 0 8 0.544494 5 18 0 8 0.571541 5 21 0 8 0.593577 5 22 0 8 0.530408 5 24 0 8 0.652899 5 25 0 8 0.62845 5 28 0 8 0.60309 5 30 0 8 0.54106 5 32 0 8 0.669946 5 33 0 8 0.518532 5 34 0 8 0.470898 5 35 0 8 0.670654 5 36 0 8 0.475236 5 37 0 8 0.466835 5 38 0 8 0.510574 5 40 0 8 0.470899 5 41 0 8 0.604248 5 43 0 8 0.587669 5 46 0 8 0.564242 5 47 0 8 0.474779 5 49 0 8 0.436741 5 50 0 8 0.537541 5 52 0 8 0.498221 5 54 0 8 0.506858 5 57 0 8 0.688287 5 58 0 8 0.446568 5 61 0 8 0.632735 6 18 0 8 0.596239 6 21 0 8 0.427879 6 22 0 8 0.446139 6 24 0 8 0.465986 6 31 0 8 0.499882 6 32 0 8 0.541214 6 33 0 8 0.596366 6 34 0 8 0.516939 6 35 0 8 0.555365 6 36 0 8 0.439427 6 37 0 8 0.476872 6 39 0 8 0.423158 6 40 0 8 0.464776 6 41 0 8 0.587106 6 43 0 8 0.426412 6 49 0 8 0.425136 6 54 0 8 0.478784 6 57 0 8 0.485183 7 18 0 8 0.699682 7 22 0 8 0.48468 7 24 0 8 0.593812 7 25 0 8 0.634687 7 28 0 8 0.528427 7 29 0 8 0.458341 7 30 0 8 0.470234 7 31 0 8 0.569697 7 32 0 8 0.613664 7 33 0 8 0.564292 7 34 0 8 0.515544 7 35 0 8 0.636315 7 36 0 8 0.508223 7 37 0 8 0.648291 7 38 0 8 0.493503 7 39 0 8 0.546696 7 40 0 8 0.548645 7 41 0 8 0.699764 7 43 0 8 0.550189 7 44 0 8 0.454088 7 45 0 8 0.507377 7 46 0 8 0.507482 7 49 0 8 0.59329 7 50 0 8 0.556349 7 54 0 8 0.542547 7 57 0 8 0.677765 7 61 0 8 0.494611 7 62 0 8 0.477691 8 18 0 8 0.46197 8 21 0 8 0.492535 8 22 0 8 0.470445 8 24 0 8 0.535098 8 25 0 8 0.465356 8 28 0 8 0.451057 8 30 0 8 0.462275 8 32 0 8 0.611222 8 33 0 8 0.521333 8 34 0 8 0.52841 8 35 0 8 0.63459 8 36 0 8 0.491566 8 37 0 8 0.431326 8 38 0 8 0.49362 8 40 0 8 0.431851 8 41 0 8 0.420998 8 43 0 8 0.445754 8 46 0 8 0.454672 8 57 0 8 0.47654 8 61 0 8 0.427909 9 18 0 8 0.610725 9 21 0 8 0.54512 9 22 0 8 0.520393 9 24 0 8 0.621336 9 25 0 8 0.611125 9 26 0 8 0.428796 9 28 0 8 0.53084 9 29 0 8 0.428204 9 30 0 8 0.485186 9 31 0 8 0.437772 9 32 0 8 0.66526 9 33 0 8 0.56741 9 34 0 8 0.529711 9 35 0 8 0.678175 9 36 0 8 0.503228 9 37 0 8 0.48323 9 38 0 8 0.491179 9 39 0 8 0.435919 9 40 0 8 0.452483 9 41 0 8 0.624282 9 43 0 8 0.609829 9 46 0 8 0.527882 9 47 0 8 0.458535 9 49 0 8 0.451605 9 50 0 8 0.469344 9 54 0 8 0.508559 9 57 0 8 0.65327 9 58 0 8 0.486055 9 61 0 8 0.483548 9 62 0 8 0.477976 10 21 0 8 0.452639 10 24 0 8 0.513089 10 25 0 8 0.442635 10 32 0 8 0.502792 10 33 0 8 0.449183 10 35 0 8 0.51714 10 36 0 8 0.444137 10 40 0 8 0.422831 10 57 0 8 0.509036 11 20 0 8 0.466303 11 21 0 8 0.698789 11 22 0 8 0.715383 11 23 0 8 0.629089 11 24 0 8 0.836844 11 25 0 8 0.809872 11 26 0 8 0.623743 11 28 0 8 0.659027 11 29 0 8 0.602779 11 30 0 8 0.59171 11 31 0 8 0.501807 11 32 0 8 0.755585 11 33 0 8 0.684781 11 34 0 8 0.594906 11 35 0 8 0.76862 11 36 0 8 0.635507 11 37 0 8 0.669687 11 38 0 8 0.659778 11 39 0 8 0.572873 11 40 0 8 0.632533 11 41 0 8 0.773969 11 42 0 8 0.547218 11 43 0 8 0.72261 11 44 0 8 0.545806 11 45 0 8 0.596104 11 46 0 8 0.788336 11 47 0 8 0.731952 11 49 0 8 0.66462 11 50 0 8 0.64375 11 52 0 8 0.470753 11 54 0 8 0.609035 11 56 0 8 0.473613 11 57 0 8 0.783503 11 58 0 8 0.6105 11 60 0 8 0.493777 11 61 0 8 0.642741 11 62 0 8 0.431067 12 21 0 8 0.681816 12 22 0 8 0.704913 12 23 0 8 0.572854 12 24 0 8 0.725133 12 25 0 8 0.704133 12 26 0 8 0.639589 12 28 0 8 0.646663 12 29 0 8 0.497741 12 30 0 8 0.575693 12 31 0 8 0.455923 12 32 0 8 0.629206 12 33 0 8 0.65582 12 34 0 8 0.504208 12 35 0 8 0.632081 12 36 0 8 0.777619 12 37 0 8 0.709202 12 38 0 8 0.56423 12 39 0 8 0.615514 12 40 0 8 0.659891 12 41 0 8 0.622982 12 42 0 8 0.610114 12 43 0 8 0.574277 12 44 0 8 0.531632 12 45 0 8 0.637285 12 46 0 8 0.606316 12 47 0 8 0.468368 12 48 0 8 0.539545 12 49 0 8 0.607001 12 50 0 8 0.50376 12 52 0 8 0.445762 12 54 0 8 0.5915 12 56 0 8 0.587175 12 57 0 8 0.629042 12 58 0 8 0.463872 12 60 0 8 0.43993 12 61 0 8 0.464872 13 24 0 8 0.523789 13 32 0 8 0.443715 13 35 0 8 0.439693 13 57 0 8 0.451586 14 23 0 8 0.461543 14 24 0 8 0.707801 14 25 0 8 0.768844 14 26 0 8 0.43312 14 28 0 8 0.628254 14 30 0 8 0.513939 14 32 0 8 0.654329 14 33 0 8 0.5649 14 34 0 8 0.468495 14 35 0 8 0.662017 14 36 0 8 0.471841 14 37 0 8 0.495331 14 38 0 8 0.520354 14 40 0 8 0.44312 14 41 0 8 0.60738 14 42 0 8 0.491411 14 43 0 8 0.804843 14 44 0 8 0.448259 14 45 0 8 0.493308 14 46 0 8 0.717413 14 47 0 8 0.647062 14 50 0 8 0.586982 14 54 0 8 0.459818 14 56 0 8 0.441035 14 57 0 8 0.703228 14 58 0 8 0.580645 14 61 0 8 0.666027 15 24 0 8 0.86097 15 25 0 8 0.849573 15 26 0 8 0.582486 15 28 0 8 0.807366 15 29 0 8 0.552222 15 30 0 8 0.749111 15 31 0 8 0.496485 15 32 0 8 0.732483 15 33 0 8 0.762837 15 34 0 8 0.511964 15 35 0 8 0.717505 15 36 0 8 0.531881 15 37 0 8 0.600125 15 38 0 8 0.612335 15 39 0 8 0.501004 15 40 0 8 0.644617 15 41 0 8 0.787526 15 42 0 8 0.471047 15 43 0 8 0.709705 15 44 0 8 0.482423 15 45 0 8 0.582743 15 46 0 8 0.767943 15 47 0 8 0.775015 15 49 0 8 0.653147 15 50 0 8 0.673812 15 52 0 8 0.476472 15 54 0 8 0.621769 15 56 0 8 0.440474 15 57 0 8 0.814948 15 58 0 8 0.631102 15 60 0 8 0.469137 15 61 0 8 0.73462 16 25 0 8 0.511733 16 26 0 8 0.465627 16 28 0 8 0.691767 16 30 0 8 0.477178 16 32 0 8 0.494439 16 33 0 8 0.469012 16 35 0 8 0.448882 16 36 0 8 0.429711 16 37 0 8 0.472489 16 38 0 8 0.430945 16 40 0 8 0.455065 16 46 0 8 0.422805 16 50 0 8 0.427898 16 54 0 8 0.426172 16 61 0 8 0.428958 17 28 0 8 0.564979 17 31 0 8 0.429776 17 33 0 8 0.472682 17 39 0 8 0.471423 17 40 0 8 0.510508 17 45 0 8 0.484766 17 46 0 8 0.437785 17 49 0 8 0.429828 18 28 0 8 0.622637 18 30 0 8 0.483855 18 31 0 8 0.539942 18 32 0 8 0.499664 18 33 0 8 0.527497 18 35 0 8 0.46817 18 36 0 8 0.458622 18 37 0 8 0.521423 18 39 0 8 0.504985 18 40 0 8 0.560577 18 41 0 8 0.627937 18 43 0 8 0.552975 18 45 0 8 0.466759 18 46 0 8 0.707371 18 47 0 8 0.583338 18 49 0 8 0.573657 18 50 0 8 0.507654 18 54 0 8 0.559805 18 57 0 8 0.641114 18 58 0 8 0.449103 18 60 0 8 0.457359 18 61 0 8 0.466941 19 28 0 8 0.455925 19 32 0 8 0.586166 19 35 0 8 0.568543 19 46 0 8 0.421988 21 32 0 8 0.527327 21 33 0 8 0.470724 21 35 0 8 0.524947 21 37 0 8 0.426365 21 40 0 8 0.500887 21 41 0 8 0.472995 21 43 0 8 0.549666 21 46 0 8 0.470556 21 47 0 8 0.434393 21 54 0 8 0.447017 21 57 0 8 0.549625 21 60 0 8 0.508411 21 61 0 8 0.445725 22 31 0 8 0.456002 22 32 0 8 0.679321 22 33 0 8 0.656151 22 34 0 8 0.728151 22 35 0 8 0.666823 22 36 0 8 0.600771 22 37 0 8 0.569209 22 38 0 8 0.64037 22 39 0 8 0.575734 22 40 0 8 0.712536 22 41 0 8 0.627617 22 42 0 8 0.487168 22 43 0 8 0.578255 22 45 0 8 0.71718 22 46 0 8 0.774466 22 47 0 8 0.493707 22 49 0 8 0.661097 22 50 0 8 0.56847 22 54 0 8 0.518583 22 56 0 8 0.550934 22 57 0 8 0.619076 22 58 0 8 0.449669 22 60 0 8 0.426031 22 61 0 8 0.503699 23 33 0 8 0.457892 24 33 0 8 0.546206 24 34 0 8 0.45674 24 35 0 8 0.686973 24 36 0 8 0.512844 24 37 0 8 0.637805 24 38 0 8 0.567634 24 40 0 8 0.584126 24 41 0 8 0.578844 24 43 0 8 0.641218 24 45 0 8 0.48129 24 46 0 8 0.734836 24 47 0 8 0.609908 24 49 0 8 0.545942 24 50 0 8 0.496437 24 52 0 8 0.445718 24 54 0 8 0.504471 24 56 0 8 0.426998 24 57 0 8 0.694955 24 58 0 8 0.505914 24 60 0 8 0.466514 24 61 0 8 0.618816 25 34 0 8 0.63534 25 35 0 8 0.821867 25 36 0 8 0.623359 25 37 0 8 0.683207 25 38 0 8 0.688932 25 39 0 8 0.69024 25 40 0 8 0.784997 25 41 0 8 0.789143 25 42 0 8 0.516397 25 43 0 8 0.876654 25 44 0 8 0.552443 25 45 0 8 0.695297 25 46 0 8 0.77121 25 47 0 8 0.736271 25 49 0 8 0.616027 25 50 0 8 0.707394 25 52 0 8 0.467928 25 54 0 8 0.530934 25 56 0 8 0.510675 25 57 0 8 0.804141 25 58 0 8 0.619898 25 60 0 8 0.491672 25 61 0 8 0.831209 26 35 0 8 0.650253 26 36 0 8 0.794109 26 37 0 8 0.730535 26 38 0 8 0.572751 26 39 0 8 0.75686 26 40 0 8 0.74648 26 41 0 8 0.680739 26 42 0 8 0.475595 26 43 0 8 0.707777 26 45 0 8 0.728969 26 46 0 8 0.795592 26 47 0 8 0.633776 26 48 0 8 0.438764 26 49 0 8 0.774861 26 50 0 8 0.588086 26 52 0 8 0.468468 26 54 0 8 0.711069 26 56 0 8 0.451017 26 57 0 8 0.678441 26 58 0 8 0.448387 26 60 0 8 0.467039 26 61 0 8 0.58865 27 60 0 8 0.448288 28 37 0 8 0.520705 28 38 0 8 0.5093 28 39 0 8 0.47628 28 40 0 8 0.491256 28 41 0 8 0.514657 28 43 0 8 0.558191 28 45 0 8 0.493117 28 46 0 8 0.656956 28 47 0 8 0.458007 28 49 0 8 0.455284 28 50 0 8 0.510818 28 52 0 8 0.486242 28 54 0 8 0.601197 28 56 0 8 0.446445 28 57 0 8 0.622294 28 58 0 8 0.48393 28 60 0 8 0.643888 28 61 0 8 0.550616 29 38 0 8 0.477613 29 40 0 8 0.468357 29 41 0 8 0.593578 29 43 0 8 0.464699 29 46 0 8 0.48917 29 49 0 8 0.426236 29 57 0 8 0.622891 29 61 0 8 0.426305 30 39 0 8 0.552403 30 40 0 8 0.605464 30 41 0 8 0.636118 30 42 0 8 0.536901 30 43 0 8 0.624965 30 45 0 8 0.59349 30 46 0 8 0.752298 30 47 0 8 0.503219 30 50 0 8 0.552748 30 51 0 8 0.430591 30 52 0 8 0.549236 30 54 0 8 0.568957 30 57 0 8 0.674493 30 58 0 8 0.44303 30 61 0 8 0.646027 31 40 0 8 0.564038 31 41 0 8 0.588346 31 43 0 8 0.4801 31 46 0 8 0.513279 31 49 0 8 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0.665352 39 60 0 8 0.500077 40 49 0 8 0.769288 40 50 0 8 0.50727 40 52 0 8 0.46046 40 54 0 8 0.598768 40 56 0 8 0.5879 40 57 0 8 0.736031 40 58 0 8 0.488316 40 60 0 8 0.612289 40 61 0 8 0.520458 41 50 0 8 0.712562 41 51 0 8 0.444919 41 52 0 8 0.454 41 54 0 8 0.670909 41 56 0 8 0.481268 41 57 0 8 0.854021 41 58 0 8 0.539603 41 61 0 8 0.649567 41 62 0 8 0.547039 42 57 0 8 0.580671 43 52 0 8 0.486401 43 54 0 8 0.6955 43 56 0 8 0.536366 43 57 0 8 0.833798 43 58 0 8 0.635018 43 61 0 8 0.811612 44 54 0 8 0.645045 44 56 0 8 0.520926 44 57 0 8 0.695358 44 58 0 8 0.494187 44 61 0 8 0.49848 45 54 0 8 0.564068 45 57 0 8 0.60241 45 61 0 8 0.469212 46 56 0 8 0.586915 46 57 0 8 0.807255 46 58 0 8 0.589389 46 60 0 8 0.592535 46 61 0 8 0.78203 47 56 0 8 0.63562 47 57 0 8 0.946108 47 58 0 8 0.707993 47 60 0 8 0.638254 47 61 0 8 0.878574 48 57 0 8 0.632391 48 60 0 8 0.47991 48 61 0 8 0.582197 49 58 0 8 0.470133 49 60 0 8 0.599491 49 61 0 8 0.651445 49 62 0 8 0.424524 50 61 0 8 0.729818 51 61 0 8 0.534956 52 61 0 8 0.62601 54 63 0 8 0.429115 END