/projects/compbio/experiments/protein-predict/casp8/starter-directory/Make.main:234: job running on cheep.cse.ucsc.edu SAM: checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08 Done with sequence reading /projects/compbio/experiments/protein-predict/casp8/starter-directory/Make.main:258: LENGTH= 69 SAM: checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08 Done with sequence reading /projects/compbio/experiments/protein-predict/casp8/starter-directory/Make.main:3218: DIMER_BREAK_BEFORE='L87' mkdir -p decoys rm decoys/read-pdb+servers.under cd decoys; shopt -s nullglob ; for x in ../*.ts-submitted* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in *.pdb* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in ../*mer/decoys/*.pdb* ; \ do \ y=${x#../} ;\ z=${y/decoys} ;\ a=${z/TR464.} ;\ b=${a%.gz} ;\ c=${b%.pdb} ;\ echo ReadConformPDB $x chain A name $c >> read-pdb+servers.under ; \ done cd decoys; shopt -s nullglob ; for x in servers/* ; do \ y=${x%.pdb.gz} ; \ z=${y#servers/} ; \ echo ReadConformPDB $x name $z >> read-pdb+servers.under ; \ echo SCWRLConform >> read-pdb+servers.under ; \ echo NameConform $z-scwrl >> read-pdb+servers.under ; \ done chgrp protein decoys/read-pdb+servers.under chmod g+w decoys/read-pdb+servers.under rm -f decoys/evaluate.rdb sed -e s/XXX0000/TR464/ -e s/START_COL/18/ \ -e s/REAL_PDB/2k5rA/ \ -e s/_domain// \ -e s/read-pdb/read-pdb+servers/ \ -e 's|EVALDIR|/projects/compbio/experiments/protein-predict/casp8/TR464|' \ -e 's/include COSTFCN.costfcn//' \ -e s/.COSTFCN// \ < /projects/compbio/experiments/protein-predict/casp8/starter-directory/scripts/evaluate.under \ | nice -2 /projects/compbio/programs/undertaker/undertaker # command:# Seed set to 1227119520 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 8101 examples # computed average trans backbone unit before proline from 332 examples # computed average cis backbone unit from 20 examples # trans (non-proline) backbone unit: # CA= -2.2101 1.0129 -0.0033 # O= -0.1508 2.2440 0.0016 # C= -0.6897 1.1364 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4583 -0.0000 -0.0000 # cis backbone unit: # CA= -0.1438 2.4522 0.0007 # O= -2.0283 0.9702 0.0005 # C= -0.8017 1.0759 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4664 -0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2110 1.0636 -0.0014 # O= -0.1234 2.2469 0.0075 # C= -0.6877 1.1518 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4665 0.0000 0.0000 # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 111048 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 685 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 5.127 sec, elapsed time= 5.205 sec. # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp8/TR464/ # command:# Making conformation for sequence TR464 numbered 18 through 86 Created new target TR464 from TR464.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:2k5rA expands to /projects/compbio/data/pdb/2k5r.pdb.gz 2k5rA: Read 97 residues and 773 atoms. # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50.000 * real_hbond + 50.000 * real_hbond_u + 50.000 * decoy_hbond + 50.000 * decoy_hbond_u + 10.000 * real_NO_hbond + 10.000 * real_NO_hbond_u + 10.000 * decoy_NO_hbond + 10.000 * decoy_NO_hbond_u + 10.000 * knot + 200.000 * clens + 0.000 * rmsd + 35.000 * log_rmsd + 0.000 * rmsd_ca + 30.000 * log_rmsd_ca + 1.000 * GDT + 1.000 * smooth_GDT + 0.200 * missing_atoms ) # command:# reading script from file costfcn-init-eval.under # Prefix for input files set to /projects/compbio/lib/alphabet/ # Read 4 alphabets and 0 BackgroundProbs from alpha.alphabet # Read 2 alphabets and 0 BackgroundProbs from anglevector.alphabet # Read 29 alphabets and 0 BackgroundProbs from burial.alphabet # Read 3 alphabets and 0 BackgroundProbs from burial-sep.alphabet # Read 5 alphabets and 0 BackgroundProbs from two-spot-burial.alphabet # Read 6 alphabets and 0 BackgroundProbs from hbonds.alphabet # Read 1 alphabets and 0 BackgroundProbs from str4.alphabet Unrecognized 1th alphabet rel_sa10 for BackgroundProbs that has no name Unrecognized 1th alphabet abs_sa7 for BackgroundProbs that has no name Unrecognized 1th alphabet Bystroff for BackgroundProbs that has no name Unrecognized 1th alphabet chi1_3 for BackgroundProbs that has no name Unrecognized 1th alphabet DSSP for BackgroundProbs that has no name Unrecognized 1th alphabet EBGHSTL for BackgroundProbs that has no name Unrecognized 1th alphabet str for BackgroundProbs that has no name Unrecognized 1th alphabet str2 for BackgroundProbs that has no name Unrecognized 1th alphabet dssp_ehl2 for BackgroundProbs that has no name Unrecognized 1th alphabet STRIDE for BackgroundProbs that has no name Unrecognized 1th alphabet EBGHTL for BackgroundProbs that has no name Unrecognized 1th alphabet stride_ehl2 for BackgroundProbs that has no name Unrecognized 1th alphabet tco for BackgroundProbs that has no name Unrecognized 1th alphabet pb for BackgroundProbs that has no name Unrecognized 1th alphabet gamma_2 for BackgroundProbs that has no name Unrecognized 1th alphabet str5 for BackgroundProbs that has no name Unrecognized 1th alphabet strand_sep for BackgroundProbs that has no name # Read 0 alphabets and 24 BackgroundProbs from dunbrack-in-scop.backgrounds # Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # ReadAtomType exp2-pdb.types Read AtomType exp2-pdb with 50 types. # ReadClashTable exp2-pdb-cullpdb_pc80_res1.2_R0.2_d070810_chains408-2symm.clash # Read ClashTable exp2-pdb-cullpdb_pc80_res1.2_R0.2_d070810_chains408-2symm checking bonds symmetric at MaxSep 2 # Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # reading histogram from smoothed-monomeric-50pc-CB14.hist # created burial cost function cb14 with radius 14.000 with spots at CB counting only CB # Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.650 with spots at near-backbone-center.spot counting only near-backbone-count.spot # Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.900 with spots at way-back-center.spot counting only way-back-count.spot # reading histogram from dunbrack-40pc-3157-CB8-sep9.hist # created burial cost function CB8-sep9 with radius 8.000 with spots at CB counting only CB with minimum separation 9 # Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5.000 with spots at monomeric-50pc-dry-5.spot # Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.500 with spots at monomeric-50pc-wet-6.5.spot # Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.500 with spots at monomeric-50pc-dry-6.5.spot # Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8.000 with spots at monomeric-50pc-dry-8.spot # Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10.000 with spots at monomeric-50pc-dry-10.spot # Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t2k.alpha.rdb or /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t2k.alpha.rdb.gz for input Trying TR464.t2k.alpha.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t04.alpha.rdb or /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t04.alpha.rdb.gz for input Trying TR464.t04.alpha.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t06.alpha.rdb or /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t06.alpha.rdb.gz for input Trying TR464.t06.alpha.rdb # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12.000 with spots at monomeric-50pc-dry-12.spot # reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp8/TR464 # CreateCombinedNNet created CombinedNNet pred_alpha_back Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t2k.bys.rdb or /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t2k.bys.rdb.gz for input Trying TR464.t2k.bys.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t04.bys.rdb or /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t04.bys.rdb.gz for input Trying TR464.t04.bys.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t06.bys.rdb or /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t06.bys.rdb.gz for input Trying TR464.t06.bys.rdb # created predicted alpha cost function pred_alpha_back with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # CreateCombinedNNet created CombinedNNet bys_back # created predicted AngleVectorPredCostFcn pred_bys_back Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t2k.pb.rdb or /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t2k.pb.rdb.gz for input Trying TR464.t2k.pb.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t04.pb.rdb or /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t04.pb.rdb.gz for input Trying TR464.t04.pb.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t06.pb.rdb or /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t06.pb.rdb.gz for input Trying TR464.t06.pb.rdb # CreateCombinedNNet created CombinedNNet pb_back # created predicted AngleVectorPredCostFcn pred_pb_back Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t2k.n_sep.rdb or /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t2k.n_sep.rdb.gz for input Trying TR464.t2k.n_sep.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t04.n_sep.rdb or /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t04.n_sep.rdb.gz for input Trying TR464.t04.n_sep.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t06.n_sep.rdb or /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t06.n_sep.rdb.gz for input Trying TR464.t06.n_sep.rdb # CreateCombinedNNet created CombinedNNet n_sep_back # created predicted HbondPredCostFcn pred_n_sep_back Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t2k.o_sep.rdb or /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t2k.o_sep.rdb.gz for input Trying TR464.t2k.o_sep.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t04.o_sep.rdb or /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t04.o_sep.rdb.gz for input Trying TR464.t04.o_sep.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t06.o_sep.rdb or /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t06.o_sep.rdb.gz for input Trying TR464.t06.o_sep.rdb # CreateCombinedNNet created CombinedNNet o_sep_back # created predicted HbondPredCostFcn pred_o_sep_back Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t2k.n_notor.rdb or /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t2k.n_notor.rdb.gz for input Trying TR464.t2k.n_notor.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t04.n_notor.rdb or /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t04.n_notor.rdb.gz for input Trying TR464.t04.n_notor.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t06.n_notor.rdb or /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t06.n_notor.rdb.gz for input Trying TR464.t06.n_notor.rdb # CreateCombinedNNet created CombinedNNet n_notor_back # created predicted HbondPredCostFcn pred_n_notor_back Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t2k.o_notor.rdb or /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t2k.o_notor.rdb.gz for input Trying TR464.t2k.o_notor.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t04.o_notor.rdb or /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t04.o_notor.rdb.gz for input Trying TR464.t04.o_notor.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t06.o_notor.rdb or /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t06.o_notor.rdb.gz for input Trying TR464.t06.o_notor.rdb # CreateCombinedNNet created CombinedNNet o_notor_back # created predicted HbondPredCostFcn pred_o_notor_back Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t2k.n_notor2.rdb or /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t2k.n_notor2.rdb.gz for input Trying TR464.t2k.n_notor2.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t04.n_notor2.rdb or /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t04.n_notor2.rdb.gz for input Trying TR464.t04.n_notor2.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t06.n_notor2.rdb or /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t06.n_notor2.rdb.gz for input Trying TR464.t06.n_notor2.rdb # CreateCombinedNNet created CombinedNNet n_notor2_back # created predicted HbondPredCostFcn pred_n_notor2_back Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t2k.o_notor2.rdb or /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t2k.o_notor2.rdb.gz for input Trying TR464.t2k.o_notor2.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t04.o_notor2.rdb or /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t04.o_notor2.rdb.gz for input Trying TR464.t04.o_notor2.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t06.o_notor2.rdb or /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t06.o_notor2.rdb.gz for input Trying TR464.t06.o_notor2.rdb # CreateCombinedNNet created CombinedNNet o_notor2_back # created predicted HbondPredCostFcn pred_o_notor2_back Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t2k.str4.rdb or /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t2k.str4.rdb.gz for input Trying TR464.t2k.str4.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t04.str4.rdb or /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t04.str4.rdb.gz for input Trying TR464.t04.str4.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t06.str4.rdb or /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t06.str4.rdb.gz for input Trying TR464.t06.str4.rdb # CreateCombinedNNet created CombinedNNet str4_back # created predicted HbondPredCostFcn pred_str4_back Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t2k.near-backbone-11.rdb or /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t2k.near-backbone-11.rdb.gz for input Trying TR464.t2k.near-backbone-11.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t04.near-backbone-11.rdb or /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t04.near-backbone-11.rdb.gz for input Trying TR464.t04.near-backbone-11.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t06.near-backbone-11.rdb or /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t06.near-backbone-11.rdb.gz for input Trying TR464.t06.near-backbone-11.rdb # CreateCombinedNNet created CombinedNNet pred_nb11_back # created predicted BurialPredCostFcn pred_nb11_back Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t2k.CB_burial_14_7.rdb or /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t2k.CB_burial_14_7.rdb.gz for input Trying TR464.t2k.CB_burial_14_7.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t04.CB_burial_14_7.rdb or /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t04.CB_burial_14_7.rdb.gz for input Trying TR464.t04.CB_burial_14_7.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t06.CB_burial_14_7.rdb or /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t06.CB_burial_14_7.rdb.gz for input Trying TR464.t06.CB_burial_14_7.rdb # CreateCombinedNNet created CombinedNNet pred_cb14_back # created predicted BurialPredCostFcn pred_cb14_back Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t06.CB8-sep9.rdb or /projects/compbio/experiments/protein-predict/casp8/TR464TR464.t06.CB8-sep9.rdb.gz for input Trying TR464.t06.CB8-sep9.rdb # CreateCombinedNNet created CombinedNNet pred_CB8_sep9_back # created predicted BurialPredCostFcn pred_CB8_sep9_back # future Constraint commands -> align_constraints # future HelixConstraint commands -> align_constraints # future StrandConstraint commands -> align_constraints # future SheetConstraint commands -> align_constraints # future Hbond commands -> align_constraints # future SSbond commands -> align_constraints Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464align.constraints or /projects/compbio/experiments/protein-predict/casp8/TR464align.constraints.gz for input Trying align.constraints # reading script from file align.constraints # Constraint # added constraint: constraint((TR464)L54.CB, (TR464)I65.CB) [> 4.246 = 7.077 < 9.201] w=1.000 to align_constraints # Constraint # added constraint: constraint((TR464)L54.CB, (TR464)F63.CB) [> 3.137 = 5.228 < 6.797] w=1.000 to align_constraints # Constraint # added constraint: constraint((TR464)A53.CB, (TR464)I65.CB) [> 3.950 = 6.584 < 8.559] w=0.853 to align_constraints # Constraint # added constraint: constraint((TR464)A53.CB, (TR464)R64.CB) [> 3.707 = 6.178 < 8.032] w=0.853 to align_constraints # Constraint # added constraint: constraint((TR464)A53.CB, (TR464)F63.CB) [> 3.963 = 6.605 < 8.586] w=0.780 to align_constraints # Constraint # added constraint: constraint((TR464)A53.CB, (TR464)V62.CB) [> 3.051 = 5.085 < 6.610] w=0.780 to align_constraints # Constraint # added constraint: constraint((TR464)A41.CB, (TR464)L54.CB) [> 4.032 = 6.721 < 8.737] w=0.764 to align_constraints # Constraint # added constraint: constraint((TR464)A41.CB, (TR464)A53.CB) [> 2.950 = 4.917 < 6.392] w=0.618 to align_constraints # Constraint # added constraint: constraint((TR464)V38.CB, (TR464)I65.CB) [> 3.276 = 5.459 < 7.097] w=0.580 to align_constraints # Constraint # added constraint: constraint((TR464)A41.CB, (TR464)R64.CB) [> 4.231 = 7.052 < 9.167] w=0.580 to align_constraints # Constraint # added constraint: constraint((TR464)Q39.CB, (TR464)S68.CB) [> 3.423 = 5.705 < 7.417] w=0.539 to align_constraints # Constraint # added constraint: constraint((TR464)Q39.CB, (TR464)I65.CB) [> 4.341 = 7.235 < 9.406] w=0.539 to align_constraints # Constraint # added constraint: constraint((TR464)E52.CB, (TR464)I65.CB) [> 3.145 = 5.241 < 6.814] w=0.527 to align_constraints # Constraint # added constraint: constraint((TR464)E52.CB, (TR464)R64.CB) [> 4.646 = 7.743 < 10.066] w=0.527 to align_constraints # Constraint # added constraint: constraint((TR464)H51.CB, (TR464)V62.CB) [> 4.234 = 7.056 < 9.173] w=0.486 to align_constraints # Constraint # added constraint: constraint((TR464)L54.CB, (TR464)P70.CB) [> 3.279 = 5.464 < 7.104] w=0.486 to align_constraints # Constraint # added constraint: constraint((TR464)L54.CB, (TR464)L72.CB) [> 4.567 = 7.612 < 9.896] w=0.486 to align_constraints # Constraint # added constraint: constraint((TR464)F63.CB, (TR464)L72.CB) [> 3.645 = 6.075 < 7.897] w=0.486 to align_constraints # Constraint # added constraint: constraint((TR464)F63.CB, (TR464)L73.CB) [> 4.531 = 7.552 < 9.818] w=0.486 to align_constraints # Constraint # added constraint: constraint((TR464)F63.CB, (TR464)E76.CB) [> 3.523 = 5.872 < 7.634] w=0.486 to align_constraints # Constraint # added constraint: constraint((TR464)A41.CB, (TR464)I65.CB) [> 2.382 = 3.971 < 5.162] w=0.482 to align_constraints # Constraint # added constraint: constraint((TR464)R40.CB, (TR464)I65.CB) [> 3.666 = 6.110 < 7.943] w=0.482 to align_constraints # Constraint # added constraint: constraint((TR464)T37.CB, (TR464)S68.CB) [> 3.465 = 5.775 < 7.507] w=0.440 to align_constraints # Constraint # added constraint: constraint((TR464)V38.CB, (TR464)S68.CB) [> 4.034 = 6.723 < 8.739] w=0.440 to align_constraints # Constraint # added constraint: constraint((TR464)R40.CB, (TR464)E66.CB) [> 3.879 = 6.464 < 8.404] w=0.440 to align_constraints # Constraint # added constraint: constraint((TR464)R40.CB, (TR464)L54.CB) [> 3.616 = 6.027 < 7.836] w=0.324 to align_constraints # Constraint # added constraint: constraint((TR464)R40.CB, (TR464)A53.CB) [> 4.752 = 7.921 < 10.297] w=0.324 to align_constraints # Constraint # added constraint: constraint((TR464)Q39.CB, (TR464)T56.CB) [> 4.631 = 7.718 < 10.033] w=0.324 to align_constraints # Constraint # added constraint: constraint((TR464)V38.CB, (TR464)P70.CB) [> 4.782 = 7.971 < 10.362] w=0.324 to align_constraints # Constraint # added constraint: constraint((TR464)V38.CB, (TR464)T56.CB) [> 3.313 = 5.522 < 7.179] w=0.324 to align_constraints # Constraint # added constraint: constraint((TR464)V38.CB, (TR464)I55.CB) [> 3.675 = 6.124 < 7.962] w=0.324 to align_constraints # Constraint # added constraint: constraint((TR464)V38.CB, (TR464)L54.CB) [> 2.363 = 3.939 < 5.120] w=0.324 to align_constraints # Constraint # added constraint: constraint((TR464)T37.CB, (TR464)T56.CB) [> 4.633 = 7.722 < 10.039] w=0.324 to align_constraints # Constraint # added constraint: constraint((TR464)F63.CB, (TR464)A77.CB) [> 3.065 = 5.108 < 6.640] w=0.324 to align_constraints # Constraint # added constraint: constraint((TR464)V62.CB, (TR464)A77.CB) [> 3.866 = 6.443 < 8.376] w=0.324 to align_constraints # Constraint # added constraint: constraint((TR464)Q61.CB, (TR464)A77.CB) [> 2.513 = 4.188 < 5.445] w=0.324 to align_constraints # Constraint # added constraint: constraint((TR464)R59.CB, (TR464)A77.CB) [> 4.737 = 7.895 < 10.264] w=0.324 to align_constraints # Constraint # added constraint: constraint((TR464)D42.CB, (TR464)E52.CB) [> 4.178 = 6.964 < 9.053] w=0.324 to align_constraints # Constraint # added constraint: constraint((TR464)A41.CB, (TR464)V62.CB) [> 4.336 = 7.226 < 9.394] w=0.324 to align_constraints # Constraint # added constraint: constraint((TR464)A41.CB, (TR464)I55.CB) [> 3.470 = 5.783 < 7.518] w=0.324 to align_constraints # Constraint # added constraint: constraint((TR464)A41.CB, (TR464)E52.CB) [> 4.203 = 7.005 < 9.107] w=0.324 to align_constraints # Constraint # added constraint: constraint((TR464)L50.CB, (TR464)V62.CB) [> 3.531 = 5.885 < 7.651] w=0.181 to align_constraints # Constraint # added constraint: constraint((TR464)D42.CB, (TR464)I55.CB) [> 4.472 = 7.453 < 9.688] w=0.147 to align_constraints # Constraint # added constraint: constraint((TR464)D42.CB, (TR464)V62.CB) [> 3.814 = 6.356 < 8.263] w=0.147 to align_constraints # Constraint # added constraint: constraint((TR464)T37.CB, (TR464)I65.CB) [> 3.302 = 5.503 < 7.154] w=0.098 to align_constraints # Constraint # added constraint: constraint((TR464)T37.CB, (TR464)E66.CB) [> 3.010 = 5.016 < 6.521] w=0.098 to align_constraints # Constraint # added constraint: constraint((TR464)V38.CB, (TR464)V71.CB) [> 4.384 = 7.306 < 9.498] w=0.098 to align_constraints # Constraint # added constraint: constraint((TR464)Q48.CB, (TR464)Q61.CB) [> 4.019 = 6.699 < 8.709] w=0.098 to align_constraints # Constraint # added constraint: constraint((TR464)S49.CB, (TR464)Q61.CB) [> 3.744 = 6.239 < 8.111] w=0.098 to align_constraints # Constraint # added constraint: constraint((TR464)S49.CB, (TR464)V62.CB) [> 4.650 = 7.750 < 10.075] w=0.098 to align_constraints # Constraint # added constraint: constraint((TR464)L50.CB, (TR464)Q61.CB) [> 3.917 = 6.529 < 8.487] w=0.098 to align_constraints # Constraint # added constraint: constraint((TR464)Q48.CB, (TR464)D58.CB) [> 3.159 = 5.265 < 6.844] w=0.082 to align_constraints # Constraint # added constraint: constraint((TR464)A34.CB, (TR464)I45.CB) [> 4.496 = 7.494 < 9.742] w=0.052 to align_constraints # Constraint # added constraint: constraint((TR464)N30.CB, (TR464)L50.CB) [> 4.672 = 7.787 < 10.124] w=0.052 to align_constraints # Constraint # added constraint: constraint((TR464)N30.CB, (TR464)L72.CB) [> 4.348 = 7.247 < 9.422] w=0.049 to align_constraints # Constraint # added constraint: constraint((TR464)L29.CB, (TR464)V38.CB) [> 4.665 = 7.775 < 10.107] w=0.049 to align_constraints # Constraint # added constraint: constraint((TR464)I55.CB, (TR464)I65.CB) [> 3.699 = 6.165 < 8.014] w=0.049 to align_constraints # Constraint # added constraint: constraint((TR464)I33.CB, (TR464)S44.CB) [> 2.691 = 4.485 < 5.830] w=0.041 to align_constraints # Constraint # added constraint: constraint((TR464)I33.CB, (TR464)V71.CB) [> 3.805 = 6.341 < 8.244] w=0.041 to align_constraints # Constraint # added constraint: constraint((TR464)I33.CB, (TR464)L73.CB) [> 2.853 = 4.755 < 6.182] w=0.041 to align_constraints # Constraint # added constraint: constraint((TR464)I33.CB, (TR464)G43.CA) [> 2.894 = 4.824 < 6.271] w=0.041 to align_constraints # Constraint # added constraint: constraint((TR464)A32.CB, (TR464)V71.CB) [> 4.457 = 7.428 < 9.656] w=0.041 to align_constraints # Constraint # added constraint: constraint((TR464)A32.CB, (TR464)G43.CA) [> 4.090 = 6.817 < 8.862] w=0.041 to align_constraints # Constraint # added constraint: constraint((TR464)N30.CB, (TR464)Q46.CB) [> 2.712 = 4.520 < 5.876] w=0.041 to align_constraints # Constraint # added constraint: constraint((TR464)L29.CB, (TR464)V71.CB) [> 2.974 = 4.956 < 6.443] w=0.041 to align_constraints # Constraint # added constraint: constraint((TR464)L29.CB, (TR464)L50.CB) [> 3.764 = 6.274 < 8.156] w=0.041 to align_constraints # Constraint # added constraint: constraint((TR464)L29.CB, (TR464)S44.CB) [> 4.626 = 7.710 < 10.023] w=0.041 to align_constraints # Constraint # added constraint: constraint((TR464)L72.CB, (TR464)I81.CB) [> 3.867 = 6.446 < 8.380] w=0.041 to align_constraints # Constraint # added constraint: constraint((TR464)A53.CB, (TR464)D67.CB) [> 4.251 = 7.085 < 9.211] w=0.041 to align_constraints # Constraint # added constraint: constraint((TR464)E52.CB, (TR464)D67.CB) [> 4.414 = 7.357 < 9.564] w=0.041 to align_constraints # Constraint # added constraint: constraint((TR464)H51.CB, (TR464)I81.CB) [> 3.155 = 5.258 < 6.836] w=0.041 to align_constraints # Constraint # added constraint: constraint((TR464)H51.CB, (TR464)I78.CB) [> 3.490 = 5.817 < 7.562] w=0.041 to align_constraints # Constraint # added constraint: constraint((TR464)H51.CB, (TR464)L72.CB) [> 2.468 = 4.114 < 5.348] w=0.041 to align_constraints # Constraint # added constraint: constraint((TR464)L50.CB, (TR464)E75.CB) [> 4.798 = 7.996 < 10.395] w=0.041 to align_constraints # Constraint # added constraint: constraint((TR464)L50.CB, (TR464)L73.CB) [> 3.682 = 6.136 < 7.977] w=0.041 to align_constraints # Constraint # added constraint: constraint((TR464)L50.CB, (TR464)L72.CB) [> 3.688 = 6.147 < 7.991] w=0.041 to align_constraints # Constraint # added constraint: constraint((TR464)Q46.CB, (TR464)R57.CB) [> 4.671 = 7.784 < 10.120] w=0.041 to align_constraints # Constraint # added constraint: constraint((TR464)L26.CB, (TR464)F63.CB) [> 4.468 = 7.446 < 9.680] w=0.034 to align_constraints # Constraint # added constraint: constraint((TR464)I55.CB, (TR464)I69.CB) [> 3.661 = 6.101 < 7.932] w=0.032 to align_constraints # Constraint # added constraint: constraint((TR464)L26.CB, (TR464)E52.CB) [> 4.420 = 7.367 < 9.577] w=0.017 to align_constraints # Constraint # added constraint: constraint((TR464)I45.CB, (TR464)P70.CB) [> 3.661 = 6.102 < 7.933] w=0.016 to align_constraints # Constraint # added constraint: constraint((TR464)I45.CB, (TR464)V71.CB) [> 4.396 = 7.327 < 9.525] w=0.016 to align_constraints # Constraint # added constraint: constraint((TR464)Q46.CB, (TR464)P70.CB) [> 4.070 = 6.783 < 8.818] w=0.016 to align_constraints # Constraint # added constraint: constraint((TR464)N47.CB, (TR464)S68.CB) [> 3.542 = 5.903 < 7.675] w=0.016 to align_constraints # Constraint # added constraint: constraint((TR464)N47.CB, (TR464)I69.CB) [> 4.229 = 7.048 < 9.162] w=0.016 to align_constraints # Constraint # added constraint: constraint((TR464)Q48.CB, (TR464)I69.CB) [> 3.191 = 5.319 < 6.915] w=0.016 to align_constraints # Constraint # added constraint: constraint((TR464)S49.CB, (TR464)D67.CB) [> 4.207 = 7.011 < 9.115] w=0.016 to align_constraints # Constraint # added constraint: constraint((TR464)S49.CB, (TR464)I69.CB) [> 4.714 = 7.857 < 10.214] w=0.016 to align_constraints # future Constraint commands -> align_bonus # future HelixConstraint commands -> align_bonus # future StrandConstraint commands -> align_bonus # future SheetConstraint commands -> align_bonus # future Hbond commands -> align_bonus # future SSbond commands -> align_bonus Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464align_bonus.constraints or /projects/compbio/experiments/protein-predict/casp8/TR464align_bonus.constraints.gz for input Trying align_bonus.constraints # reading script from file align_bonus.constraints # Constraint # added constraint: bonus constraint((TR464)L54.CB, (TR464)I65.CB) [> 4.246 = 7.077 < 9.201] w=1.000 to align_bonus # Constraint # added constraint: bonus constraint((TR464)L54.CB, (TR464)F63.CB) [> 3.137 = 5.228 < 6.797] w=1.000 to align_bonus # Constraint # added constraint: bonus constraint((TR464)A53.CB, (TR464)I65.CB) [> 3.950 = 6.584 < 8.559] w=0.853 to align_bonus # Constraint # added constraint: bonus constraint((TR464)A53.CB, (TR464)R64.CB) [> 3.707 = 6.178 < 8.032] w=0.853 to align_bonus # Constraint # added constraint: bonus constraint((TR464)A53.CB, (TR464)F63.CB) [> 3.963 = 6.605 < 8.586] w=0.780 to align_bonus # Constraint # added constraint: bonus constraint((TR464)A53.CB, (TR464)V62.CB) [> 3.051 = 5.085 < 6.610] w=0.780 to align_bonus # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)L54.CB) [> 4.032 = 6.721 < 8.737] w=0.764 to align_bonus # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)A53.CB) [> 2.950 = 4.917 < 6.392] w=0.618 to align_bonus # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)I65.CB) [> 3.276 = 5.459 < 7.097] w=0.580 to align_bonus # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)R64.CB) [> 4.231 = 7.052 < 9.167] w=0.580 to align_bonus # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)S68.CB) [> 3.423 = 5.705 < 7.417] w=0.539 to align_bonus # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)I65.CB) [> 4.341 = 7.235 < 9.406] w=0.539 to align_bonus # Constraint # added constraint: bonus constraint((TR464)E52.CB, (TR464)I65.CB) [> 3.145 = 5.241 < 6.814] w=0.527 to align_bonus # Constraint # added constraint: bonus constraint((TR464)E52.CB, (TR464)R64.CB) [> 4.646 = 7.743 < 10.066] w=0.527 to align_bonus # Constraint # added constraint: bonus constraint((TR464)H51.CB, (TR464)V62.CB) [> 4.234 = 7.056 < 9.173] w=0.486 to align_bonus # Constraint # added constraint: bonus constraint((TR464)L54.CB, (TR464)P70.CB) [> 3.279 = 5.464 < 7.104] w=0.486 to align_bonus # Constraint # added constraint: bonus constraint((TR464)L54.CB, (TR464)L72.CB) [> 4.567 = 7.612 < 9.896] w=0.486 to align_bonus # Constraint # added constraint: bonus constraint((TR464)F63.CB, (TR464)L72.CB) [> 3.645 = 6.075 < 7.897] w=0.486 to align_bonus # Constraint # added constraint: bonus constraint((TR464)F63.CB, (TR464)L73.CB) [> 4.531 = 7.552 < 9.818] w=0.486 to align_bonus # Constraint # added constraint: bonus constraint((TR464)F63.CB, (TR464)E76.CB) [> 3.523 = 5.872 < 7.634] w=0.486 to align_bonus # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)I65.CB) [> 2.382 = 3.971 < 5.162] w=0.482 to align_bonus # Constraint # added constraint: bonus constraint((TR464)R40.CB, (TR464)I65.CB) [> 3.666 = 6.110 < 7.943] w=0.482 to align_bonus # Constraint # added constraint: bonus constraint((TR464)T37.CB, (TR464)S68.CB) [> 3.465 = 5.775 < 7.507] w=0.440 to align_bonus # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)S68.CB) [> 4.034 = 6.723 < 8.739] w=0.440 to align_bonus # Constraint # added constraint: bonus constraint((TR464)R40.CB, (TR464)E66.CB) [> 3.879 = 6.464 < 8.404] w=0.440 to align_bonus # Constraint # added constraint: bonus constraint((TR464)R40.CB, (TR464)L54.CB) [> 3.616 = 6.027 < 7.836] w=0.324 to align_bonus # Constraint # added constraint: bonus constraint((TR464)R40.CB, (TR464)A53.CB) [> 4.752 = 7.921 < 10.297] w=0.324 to align_bonus # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)T56.CB) [> 4.631 = 7.718 < 10.033] w=0.324 to align_bonus # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)P70.CB) [> 4.782 = 7.971 < 10.362] w=0.324 to align_bonus # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)T56.CB) [> 3.313 = 5.522 < 7.179] w=0.324 to align_bonus # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)I55.CB) [> 3.675 = 6.124 < 7.962] w=0.324 to align_bonus # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)L54.CB) [> 2.363 = 3.939 < 5.120] w=0.324 to align_bonus # Constraint # added constraint: bonus constraint((TR464)T37.CB, (TR464)T56.CB) [> 4.633 = 7.722 < 10.039] w=0.324 to align_bonus # Constraint # added constraint: bonus constraint((TR464)F63.CB, (TR464)A77.CB) [> 3.065 = 5.108 < 6.640] w=0.324 to align_bonus # Constraint # added constraint: bonus constraint((TR464)V62.CB, (TR464)A77.CB) [> 3.866 = 6.443 < 8.376] w=0.324 to align_bonus # Constraint # added constraint: bonus constraint((TR464)Q61.CB, (TR464)A77.CB) [> 2.513 = 4.188 < 5.445] w=0.324 to align_bonus # Constraint # added constraint: bonus constraint((TR464)R59.CB, (TR464)A77.CB) [> 4.737 = 7.895 < 10.264] w=0.324 to align_bonus # Constraint # added constraint: bonus constraint((TR464)D42.CB, (TR464)E52.CB) [> 4.178 = 6.964 < 9.053] w=0.324 to align_bonus # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)V62.CB) [> 4.336 = 7.226 < 9.394] w=0.324 to align_bonus # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)I55.CB) [> 3.470 = 5.783 < 7.518] w=0.324 to align_bonus # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)E52.CB) [> 4.203 = 7.005 < 9.107] w=0.324 to align_bonus # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)V62.CB) [> 3.531 = 5.885 < 7.651] w=0.181 to align_bonus # Constraint # added constraint: bonus constraint((TR464)D42.CB, (TR464)I55.CB) [> 4.472 = 7.453 < 9.688] w=0.147 to align_bonus # Constraint # added constraint: bonus constraint((TR464)D42.CB, (TR464)V62.CB) [> 3.814 = 6.356 < 8.263] w=0.147 to align_bonus # Constraint # added constraint: bonus constraint((TR464)T37.CB, (TR464)I65.CB) [> 3.302 = 5.503 < 7.154] w=0.098 to align_bonus # Constraint # added constraint: bonus constraint((TR464)T37.CB, (TR464)E66.CB) [> 3.010 = 5.016 < 6.521] w=0.098 to align_bonus # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)V71.CB) [> 4.384 = 7.306 < 9.498] w=0.098 to align_bonus # Constraint # added constraint: bonus constraint((TR464)Q48.CB, (TR464)Q61.CB) [> 4.019 = 6.699 < 8.709] w=0.098 to align_bonus # Constraint # added constraint: bonus constraint((TR464)S49.CB, (TR464)Q61.CB) [> 3.744 = 6.239 < 8.111] w=0.098 to align_bonus # Constraint # added constraint: bonus constraint((TR464)S49.CB, (TR464)V62.CB) [> 4.650 = 7.750 < 10.075] w=0.098 to align_bonus # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)Q61.CB) [> 3.917 = 6.529 < 8.487] w=0.098 to align_bonus # Constraint # added constraint: bonus constraint((TR464)Q48.CB, (TR464)D58.CB) [> 3.159 = 5.265 < 6.844] w=0.082 to align_bonus # Constraint # added constraint: bonus constraint((TR464)A34.CB, (TR464)I45.CB) [> 4.496 = 7.494 < 9.742] w=0.052 to align_bonus # Constraint # added constraint: bonus constraint((TR464)N30.CB, (TR464)L50.CB) [> 4.672 = 7.787 < 10.124] w=0.052 to align_bonus # Constraint # added constraint: bonus constraint((TR464)N30.CB, (TR464)L72.CB) [> 4.348 = 7.247 < 9.422] w=0.049 to align_bonus # Constraint # added constraint: bonus constraint((TR464)L29.CB, (TR464)V38.CB) [> 4.665 = 7.775 < 10.107] w=0.049 to align_bonus # Constraint # added constraint: bonus constraint((TR464)I55.CB, (TR464)I65.CB) [> 3.699 = 6.165 < 8.014] w=0.049 to align_bonus # Constraint # added constraint: bonus constraint((TR464)I33.CB, (TR464)S44.CB) [> 2.691 = 4.485 < 5.830] w=0.041 to align_bonus # Constraint # added constraint: bonus constraint((TR464)I33.CB, (TR464)V71.CB) [> 3.805 = 6.341 < 8.244] w=0.041 to align_bonus # Constraint # added constraint: bonus constraint((TR464)I33.CB, (TR464)L73.CB) [> 2.853 = 4.755 < 6.182] w=0.041 to align_bonus # Constraint # added constraint: bonus constraint((TR464)I33.CB, (TR464)G43.CA) [> 2.894 = 4.824 < 6.271] w=0.041 to align_bonus # Constraint # added constraint: bonus constraint((TR464)A32.CB, (TR464)V71.CB) [> 4.457 = 7.428 < 9.656] w=0.041 to align_bonus # Constraint # added constraint: bonus constraint((TR464)A32.CB, (TR464)G43.CA) [> 4.090 = 6.817 < 8.862] w=0.041 to align_bonus # Constraint # added constraint: bonus constraint((TR464)N30.CB, (TR464)Q46.CB) [> 2.712 = 4.520 < 5.876] w=0.041 to align_bonus # Constraint # added constraint: bonus constraint((TR464)L29.CB, (TR464)V71.CB) [> 2.974 = 4.956 < 6.443] w=0.041 to align_bonus # Constraint # added constraint: bonus constraint((TR464)L29.CB, (TR464)L50.CB) [> 3.764 = 6.274 < 8.156] w=0.041 to align_bonus # Constraint # added constraint: bonus constraint((TR464)L29.CB, (TR464)S44.CB) [> 4.626 = 7.710 < 10.023] w=0.041 to align_bonus # Constraint # added constraint: bonus constraint((TR464)L72.CB, (TR464)I81.CB) [> 3.867 = 6.446 < 8.380] w=0.041 to align_bonus # Constraint # added constraint: bonus constraint((TR464)A53.CB, (TR464)D67.CB) [> 4.251 = 7.085 < 9.211] w=0.041 to align_bonus # Constraint # added constraint: bonus constraint((TR464)E52.CB, (TR464)D67.CB) [> 4.414 = 7.357 < 9.564] w=0.041 to align_bonus # Constraint # added constraint: bonus constraint((TR464)H51.CB, (TR464)I81.CB) [> 3.155 = 5.258 < 6.836] w=0.041 to align_bonus # Constraint # added constraint: bonus constraint((TR464)H51.CB, (TR464)I78.CB) [> 3.490 = 5.817 < 7.562] w=0.041 to align_bonus # Constraint # added constraint: bonus constraint((TR464)H51.CB, (TR464)L72.CB) [> 2.468 = 4.114 < 5.348] w=0.041 to align_bonus # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)E75.CB) [> 4.798 = 7.996 < 10.395] w=0.041 to align_bonus # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)L73.CB) [> 3.682 = 6.136 < 7.977] w=0.041 to align_bonus # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)L72.CB) [> 3.688 = 6.147 < 7.991] w=0.041 to align_bonus # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)R57.CB) [> 4.671 = 7.784 < 10.120] w=0.041 to align_bonus # Constraint # added constraint: bonus constraint((TR464)L26.CB, (TR464)F63.CB) [> 4.468 = 7.446 < 9.680] w=0.034 to align_bonus # Constraint # added constraint: bonus constraint((TR464)I55.CB, (TR464)I69.CB) [> 3.661 = 6.101 < 7.932] w=0.032 to align_bonus # Constraint # added constraint: bonus constraint((TR464)L26.CB, (TR464)E52.CB) [> 4.420 = 7.367 < 9.577] w=0.017 to align_bonus # Constraint # added constraint: bonus constraint((TR464)I45.CB, (TR464)P70.CB) [> 3.661 = 6.102 < 7.933] w=0.016 to align_bonus # Constraint # added constraint: bonus constraint((TR464)I45.CB, (TR464)V71.CB) [> 4.396 = 7.327 < 9.525] w=0.016 to align_bonus # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)P70.CB) [> 4.070 = 6.783 < 8.818] w=0.016 to align_bonus # Constraint # added constraint: bonus constraint((TR464)N47.CB, (TR464)S68.CB) [> 3.542 = 5.903 < 7.675] w=0.016 to align_bonus # Constraint # added constraint: bonus constraint((TR464)N47.CB, (TR464)I69.CB) [> 4.229 = 7.048 < 9.162] w=0.016 to align_bonus # Constraint # added constraint: bonus constraint((TR464)Q48.CB, (TR464)I69.CB) [> 3.191 = 5.319 < 6.915] w=0.016 to align_bonus # Constraint # added constraint: bonus constraint((TR464)S49.CB, (TR464)D67.CB) [> 4.207 = 7.011 < 9.115] w=0.016 to align_bonus # Constraint # added constraint: bonus constraint((TR464)S49.CB, (TR464)I69.CB) [> 4.714 = 7.857 < 10.214] w=0.016 to align_bonus # future Constraint commands -> rejected_constraints # future HelixConstraint commands -> rejected_constraints # future StrandConstraint commands -> rejected_constraints # future SheetConstraint commands -> rejected_constraints # future Hbond commands -> rejected_constraints # future SSbond commands -> rejected_constraints Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464rejected.constraints or /projects/compbio/experiments/protein-predict/casp8/TR464rejected.constraints.gz for input Trying rejected.constraints # reading script from file rejected.constraints # Constraint # added constraint: constraint((TR464)R64.CB, (TR464)E76.CB) [> 3.278 = 5.463 < 7.102] w=0.486 to rejected_constraints # Constraint # added constraint: constraint((TR464)Q39.CB, (TR464)D67.CB) [> 4.137 = 6.895 < 8.964] w=0.440 to rejected_constraints # Constraint # added constraint: constraint((TR464)R40.CB, (TR464)D67.CB) [> 4.457 = 7.428 < 9.657] w=0.440 to rejected_constraints # Constraint # added constraint: constraint((TR464)Q39.CB, (TR464)R57.CB) [> 3.837 = 6.394 < 8.313] w=0.324 to rejected_constraints # Constraint # added constraint: constraint((TR464)Q39.CB, (TR464)I55.CB) [> 2.715 = 4.524 < 5.882] w=0.324 to rejected_constraints # Constraint # added constraint: constraint((TR464)Q39.CB, (TR464)L54.CB) [> 4.262 = 7.103 < 9.233] w=0.324 to rejected_constraints # Constraint # added constraint: constraint((TR464)V38.CB, (TR464)F63.CB) [> 4.205 = 7.008 < 9.110] w=0.324 to rejected_constraints # Constraint # added constraint: constraint((TR464)G43.CA, (TR464)E52.CB) [> 3.610 = 6.017 < 7.822] w=0.324 to rejected_constraints # Constraint # added constraint: constraint((TR464)D42.CB, (TR464)H51.CB) [> 4.737 = 7.895 < 10.263] w=0.324 to rejected_constraints # Constraint # added constraint: constraint((TR464)A41.CB, (TR464)H51.CB) [> 2.812 = 4.687 < 6.094] w=0.324 to rejected_constraints # Constraint # added constraint: constraint((TR464)R40.CB, (TR464)I55.CB) [> 4.716 = 7.861 < 10.219] w=0.324 to rejected_constraints # Constraint # added constraint: constraint((TR464)D42.CB, (TR464)R64.CB) [> 3.862 = 6.437 < 8.368] w=0.286 to rejected_constraints # Constraint # added constraint: constraint((TR464)D42.CB, (TR464)F63.CB) [> 4.404 = 7.339 < 9.541] w=0.188 to rejected_constraints # Constraint # added constraint: constraint((TR464)D42.CB, (TR464)L54.CB) [> 3.334 = 5.557 < 7.225] w=0.147 to rejected_constraints # Constraint # added constraint: constraint((TR464)D42.CB, (TR464)I65.CB) [> 4.390 = 7.317 < 9.513] w=0.147 to rejected_constraints # Constraint # added constraint: constraint((TR464)R40.CB, (TR464)R64.CB) [> 3.515 = 5.858 < 7.615] w=0.140 to rejected_constraints # Constraint # added constraint: constraint((TR464)G36.CA, (TR464)E66.CB) [> 4.377 = 7.294 < 9.482] w=0.098 to rejected_constraints # Constraint # added constraint: constraint((TR464)T37.CB, (TR464)D67.CB) [> 4.465 = 7.442 < 9.675] w=0.098 to rejected_constraints # Constraint # added constraint: constraint((TR464)V38.CB, (TR464)R64.CB) [> 4.424 = 7.374 < 9.586] w=0.098 to rejected_constraints # Constraint # added constraint: constraint((TR464)V38.CB, (TR464)E66.CB) [> 4.434 = 7.390 < 9.608] w=0.098 to rejected_constraints # Constraint # added constraint: constraint((TR464)Q39.CB, (TR464)R64.CB) [> 3.245 = 5.409 < 7.031] w=0.098 to rejected_constraints # Constraint # added constraint: constraint((TR464)Q39.CB, (TR464)E66.CB) [> 2.866 = 4.777 < 6.210] w=0.098 to rejected_constraints # Constraint # added constraint: constraint((TR464)I45.CB, (TR464)F63.CB) [> 4.135 = 6.891 < 8.959] w=0.098 to rejected_constraints # Constraint # added constraint: constraint((TR464)Q46.CB, (TR464)F63.CB) [> 4.755 = 7.925 < 10.303] w=0.098 to rejected_constraints # Constraint # added constraint: constraint((TR464)N47.CB, (TR464)Q61.CB) [> 3.220 = 5.367 < 6.978] w=0.098 to rejected_constraints # Constraint # added constraint: constraint((TR464)N47.CB, (TR464)V62.CB) [> 4.148 = 6.914 < 8.988] w=0.098 to rejected_constraints # Constraint # added constraint: constraint((TR464)N47.CB, (TR464)F63.CB) [> 3.611 = 6.018 < 7.823] w=0.098 to rejected_constraints # Constraint # added constraint: constraint((TR464)Q48.CB, (TR464)V62.CB) [> 3.243 = 5.405 < 7.027] w=0.098 to rejected_constraints # Constraint # added constraint: constraint((TR464)S49.CB, (TR464)K60.CB) [> 4.061 = 6.769 < 8.800] w=0.098 to rejected_constraints # Constraint # added constraint: constraint((TR464)L50.CB, (TR464)R59.CB) [> 4.023 = 6.704 < 8.715] w=0.098 to rejected_constraints # Constraint # added constraint: constraint((TR464)L50.CB, (TR464)K60.CB) [> 3.720 = 6.200 < 8.060] w=0.098 to rejected_constraints # Constraint # added constraint: constraint((TR464)H51.CB, (TR464)K60.CB) [> 4.332 = 7.220 < 9.386] w=0.082 to rejected_constraints # Constraint # added constraint: constraint((TR464)E52.CB, (TR464)E66.CB) [> 3.553 = 5.921 < 7.697] w=0.074 to rejected_constraints # Constraint # added constraint: constraint((TR464)L54.CB, (TR464)R64.CB) [> 3.338 = 5.563 < 7.232] w=0.074 to rejected_constraints # Constraint # added constraint: constraint((TR464)I33.CB, (TR464)L50.CB) [> 3.939 = 6.566 < 8.535] w=0.041 to rejected_constraints # Constraint # added constraint: constraint((TR464)A41.CB, (TR464)F63.CB) [> 4.254 = 7.090 < 9.217] w=0.041 to rejected_constraints # Constraint # added constraint: constraint((TR464)G43.CA, (TR464)Q61.CB) [> 3.270 = 5.451 < 7.086] w=0.041 to rejected_constraints # Constraint # added constraint: constraint((TR464)G43.CA, (TR464)V62.CB) [> 4.048 = 6.746 < 8.770] w=0.041 to rejected_constraints # Constraint # added constraint: constraint((TR464)G43.CA, (TR464)F63.CB) [> 3.352 = 5.587 < 7.264] w=0.041 to rejected_constraints # Constraint # added constraint: constraint((TR464)G43.CA, (TR464)R64.CB) [> 3.585 = 5.974 < 7.767] w=0.041 to rejected_constraints # Constraint # added constraint: constraint((TR464)G43.CA, (TR464)L73.CB) [> 4.572 = 7.621 < 9.907] w=0.041 to rejected_constraints # Constraint # added constraint: constraint((TR464)S44.CB, (TR464)Q61.CB) [> 3.881 = 6.468 < 8.408] w=0.041 to rejected_constraints # Constraint # added constraint: constraint((TR464)S44.CB, (TR464)V62.CB) [> 4.026 = 6.710 < 8.723] w=0.041 to rejected_constraints # Constraint # added constraint: constraint((TR464)S44.CB, (TR464)R64.CB) [> 3.125 = 5.209 < 6.772] w=0.041 to rejected_constraints # Constraint # added constraint: constraint((TR464)K31.CB, (TR464)G43.CA) [> 3.853 = 6.421 < 8.347] w=0.041 to rejected_constraints # Constraint # added constraint: constraint((TR464)N30.CB, (TR464)Q48.CB) [> 4.440 = 7.401 < 9.621] w=0.041 to rejected_constraints # Constraint # added constraint: constraint((TR464)N30.CB, (TR464)N47.CB) [> 4.588 = 7.646 < 9.940] w=0.041 to rejected_constraints # Constraint # added constraint: constraint((TR464)N30.CB, (TR464)I45.CB) [> 3.617 = 6.028 < 7.837] w=0.041 to rejected_constraints # Constraint # added constraint: constraint((TR464)N30.CB, (TR464)S44.CB) [> 2.577 = 4.295 < 5.583] w=0.041 to rejected_constraints # Constraint # added constraint: constraint((TR464)N30.CB, (TR464)G43.CA) [> 3.842 = 6.404 < 8.325] w=0.041 to rejected_constraints # Constraint # added constraint: constraint((TR464)H51.CB, (TR464)A77.CB) [> 3.709 = 6.182 < 8.037] w=0.041 to rejected_constraints # Constraint # added constraint: constraint((TR464)H51.CB, (TR464)E75.CB) [> 4.031 = 6.718 < 8.733] w=0.041 to rejected_constraints # Constraint # added constraint: constraint((TR464)H51.CB, (TR464)V71.CB) [> 4.193 = 6.989 < 9.086] w=0.041 to rejected_constraints # Constraint # added constraint: constraint((TR464)L50.CB, (TR464)V71.CB) [> 2.865 = 4.776 < 6.208] w=0.041 to rejected_constraints # Constraint # added constraint: constraint((TR464)S44.CB, (TR464)L73.CB) [> 3.593 = 5.988 < 7.784] w=0.041 to rejected_constraints # Constraint # added constraint: constraint((TR464)I45.CB, (TR464)R59.CB) [> 2.999 = 4.999 < 6.498] w=0.041 to rejected_constraints # Constraint # added constraint: constraint((TR464)I45.CB, (TR464)K60.CB) [> 4.049 = 6.748 < 8.772] w=0.041 to rejected_constraints # Constraint # added constraint: constraint((TR464)I45.CB, (TR464)Q61.CB) [> 3.542 = 5.903 < 7.674] w=0.041 to rejected_constraints # Constraint # added constraint: constraint((TR464)I45.CB, (TR464)V62.CB) [> 4.594 = 7.656 < 9.953] w=0.041 to rejected_constraints # Constraint # added constraint: constraint((TR464)Q46.CB, (TR464)T56.CB) [> 3.403 = 5.671 < 7.373] w=0.041 to rejected_constraints # Constraint # added constraint: constraint((TR464)Q46.CB, (TR464)D58.CB) [> 3.867 = 6.444 < 8.378] w=0.041 to rejected_constraints # Constraint # added constraint: constraint((TR464)Q46.CB, (TR464)R59.CB) [> 4.025 = 6.709 < 8.721] w=0.041 to rejected_constraints # Constraint # added constraint: constraint((TR464)Q46.CB, (TR464)K60.CB) [> 3.531 = 5.885 < 7.651] w=0.041 to rejected_constraints # Constraint # added constraint: constraint((TR464)Q46.CB, (TR464)Q61.CB) [> 4.306 = 7.177 < 9.330] w=0.041 to rejected_constraints # Constraint # added constraint: constraint((TR464)Q46.CB, (TR464)V62.CB) [> 2.740 = 4.567 < 5.937] w=0.041 to rejected_constraints # Constraint # added constraint: constraint((TR464)N47.CB, (TR464)D58.CB) [> 4.436 = 7.393 < 9.611] w=0.041 to rejected_constraints # Constraint # added constraint: constraint((TR464)S49.CB, (TR464)E75.CB) [> 4.070 = 6.783 < 8.818] w=0.041 to rejected_constraints # Constraint # added constraint: constraint((TR464)H51.CB, (TR464)F63.CB) [> 3.454 = 5.757 < 7.484] w=0.034 to rejected_constraints # Constraint # added constraint: constraint((TR464)L50.CB, (TR464)F63.CB) [> 4.303 = 7.172 < 9.323] w=0.034 to rejected_constraints # Constraint # added constraint: constraint((TR464)S23.CB, (TR464)F63.CB) [> 4.568 = 7.614 < 9.898] w=0.034 to rejected_constraints # Constraint # added constraint: constraint((TR464)H51.CB, (TR464)E66.CB) [> 3.551 = 5.918 < 7.694] w=0.032 to rejected_constraints # Constraint # added constraint: constraint((TR464)H51.CB, (TR464)D67.CB) [> 4.479 = 7.466 < 9.705] w=0.032 to rejected_constraints # Constraint # added constraint: constraint((TR464)A53.CB, (TR464)E66.CB) [> 4.410 = 7.350 < 9.555] w=0.032 to rejected_constraints # Constraint # added constraint: constraint((TR464)S23.CB, (TR464)E52.CB) [> 4.563 = 7.605 < 9.886] w=0.017 to rejected_constraints # Constraint # added constraint: constraint((TR464)A41.CB, (TR464)L50.CB) [> 3.940 = 6.567 < 8.536] w=0.016 to rejected_constraints # Constraint # added constraint: constraint((TR464)Q46.CB, (TR464)V71.CB) [> 2.374 = 3.956 < 5.143] w=0.016 to rejected_constraints # Constraint # added constraint: constraint((TR464)N47.CB, (TR464)P70.CB) [> 3.079 = 5.131 < 6.671] w=0.016 to rejected_constraints # Constraint # added constraint: constraint((TR464)N47.CB, (TR464)V71.CB) [> 4.464 = 7.440 < 9.672] w=0.016 to rejected_constraints # Constraint # added constraint: constraint((TR464)Q48.CB, (TR464)S68.CB) [> 4.211 = 7.018 < 9.123] w=0.016 to rejected_constraints # Constraint # added constraint: constraint((TR464)Q48.CB, (TR464)P70.CB) [> 4.794 = 7.989 < 10.386] w=0.016 to rejected_constraints # Constraint # added constraint: constraint((TR464)Q48.CB, (TR464)V71.CB) [> 4.271 = 7.118 < 9.253] w=0.016 to rejected_constraints # Constraint # added constraint: constraint((TR464)S49.CB, (TR464)S68.CB) [> 2.711 = 4.519 < 5.875] w=0.016 to rejected_constraints # future Constraint commands -> rejected_bonus # future HelixConstraint commands -> rejected_bonus # future StrandConstraint commands -> rejected_bonus # future SheetConstraint commands -> rejected_bonus # future Hbond commands -> rejected_bonus # future SSbond commands -> rejected_bonus Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464rejected_bonus.constraints or /projects/compbio/experiments/protein-predict/casp8/TR464rejected_bonus.constraints.gz for input Trying rejected_bonus.constraints # reading script from file rejected_bonus.constraints # Constraint # added constraint: bonus constraint((TR464)R64.CB, (TR464)E76.CB) [> 3.278 = 5.463 < 7.102] w=0.486 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)D67.CB) [> 4.137 = 6.895 < 8.964] w=0.440 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)R40.CB, (TR464)D67.CB) [> 4.457 = 7.428 < 9.657] w=0.440 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)R57.CB) [> 3.837 = 6.394 < 8.313] w=0.324 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)I55.CB) [> 2.715 = 4.524 < 5.882] w=0.324 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)L54.CB) [> 4.262 = 7.103 < 9.233] w=0.324 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)F63.CB) [> 4.205 = 7.008 < 9.110] w=0.324 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)G43.CA, (TR464)E52.CB) [> 3.610 = 6.017 < 7.822] w=0.324 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)D42.CB, (TR464)H51.CB) [> 4.737 = 7.895 < 10.263] w=0.324 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)H51.CB) [> 2.812 = 4.687 < 6.094] w=0.324 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)R40.CB, (TR464)I55.CB) [> 4.716 = 7.861 < 10.219] w=0.324 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)D42.CB, (TR464)R64.CB) [> 3.862 = 6.437 < 8.368] w=0.286 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)D42.CB, (TR464)F63.CB) [> 4.404 = 7.339 < 9.541] w=0.188 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)D42.CB, (TR464)L54.CB) [> 3.334 = 5.557 < 7.225] w=0.147 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)D42.CB, (TR464)I65.CB) [> 4.390 = 7.317 < 9.513] w=0.147 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)R40.CB, (TR464)R64.CB) [> 3.515 = 5.858 < 7.615] w=0.140 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)G36.CA, (TR464)E66.CB) [> 4.377 = 7.294 < 9.482] w=0.098 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)T37.CB, (TR464)D67.CB) [> 4.465 = 7.442 < 9.675] w=0.098 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)R64.CB) [> 4.424 = 7.374 < 9.586] w=0.098 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)E66.CB) [> 4.434 = 7.390 < 9.608] w=0.098 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)R64.CB) [> 3.245 = 5.409 < 7.031] w=0.098 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)E66.CB) [> 2.866 = 4.777 < 6.210] w=0.098 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)I45.CB, (TR464)F63.CB) [> 4.135 = 6.891 < 8.959] w=0.098 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)F63.CB) [> 4.755 = 7.925 < 10.303] w=0.098 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)N47.CB, (TR464)Q61.CB) [> 3.220 = 5.367 < 6.978] w=0.098 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)N47.CB, (TR464)V62.CB) [> 4.148 = 6.914 < 8.988] w=0.098 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)N47.CB, (TR464)F63.CB) [> 3.611 = 6.018 < 7.823] w=0.098 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)Q48.CB, (TR464)V62.CB) [> 3.243 = 5.405 < 7.027] w=0.098 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)S49.CB, (TR464)K60.CB) [> 4.061 = 6.769 < 8.800] w=0.098 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)R59.CB) [> 4.023 = 6.704 < 8.715] w=0.098 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)K60.CB) [> 3.720 = 6.200 < 8.060] w=0.098 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)H51.CB, (TR464)K60.CB) [> 4.332 = 7.220 < 9.386] w=0.082 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)E52.CB, (TR464)E66.CB) [> 3.553 = 5.921 < 7.697] w=0.074 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)L54.CB, (TR464)R64.CB) [> 3.338 = 5.563 < 7.232] w=0.074 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)I33.CB, (TR464)L50.CB) [> 3.939 = 6.566 < 8.535] w=0.041 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)F63.CB) [> 4.254 = 7.090 < 9.217] w=0.041 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)G43.CA, (TR464)Q61.CB) [> 3.270 = 5.451 < 7.086] w=0.041 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)G43.CA, (TR464)V62.CB) [> 4.048 = 6.746 < 8.770] w=0.041 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)G43.CA, (TR464)F63.CB) [> 3.352 = 5.587 < 7.264] w=0.041 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)G43.CA, (TR464)R64.CB) [> 3.585 = 5.974 < 7.767] w=0.041 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)G43.CA, (TR464)L73.CB) [> 4.572 = 7.621 < 9.907] w=0.041 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)S44.CB, (TR464)Q61.CB) [> 3.881 = 6.468 < 8.408] w=0.041 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)S44.CB, (TR464)V62.CB) [> 4.026 = 6.710 < 8.723] w=0.041 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)S44.CB, (TR464)R64.CB) [> 3.125 = 5.209 < 6.772] w=0.041 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)K31.CB, (TR464)G43.CA) [> 3.853 = 6.421 < 8.347] w=0.041 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)N30.CB, (TR464)Q48.CB) [> 4.440 = 7.401 < 9.621] w=0.041 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)N30.CB, (TR464)N47.CB) [> 4.588 = 7.646 < 9.940] w=0.041 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)N30.CB, (TR464)I45.CB) [> 3.617 = 6.028 < 7.837] w=0.041 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)N30.CB, (TR464)S44.CB) [> 2.577 = 4.295 < 5.583] w=0.041 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)N30.CB, (TR464)G43.CA) [> 3.842 = 6.404 < 8.325] w=0.041 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)H51.CB, (TR464)A77.CB) [> 3.709 = 6.182 < 8.037] w=0.041 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)H51.CB, (TR464)E75.CB) [> 4.031 = 6.718 < 8.733] w=0.041 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)H51.CB, (TR464)V71.CB) [> 4.193 = 6.989 < 9.086] w=0.041 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)V71.CB) [> 2.865 = 4.776 < 6.208] w=0.041 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)S44.CB, (TR464)L73.CB) [> 3.593 = 5.988 < 7.784] w=0.041 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)I45.CB, (TR464)R59.CB) [> 2.999 = 4.999 < 6.498] w=0.041 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)I45.CB, (TR464)K60.CB) [> 4.049 = 6.748 < 8.772] w=0.041 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)I45.CB, (TR464)Q61.CB) [> 3.542 = 5.903 < 7.674] w=0.041 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)I45.CB, (TR464)V62.CB) [> 4.594 = 7.656 < 9.953] w=0.041 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)T56.CB) [> 3.403 = 5.671 < 7.373] w=0.041 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)D58.CB) [> 3.867 = 6.444 < 8.378] w=0.041 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)R59.CB) [> 4.025 = 6.709 < 8.721] w=0.041 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)K60.CB) [> 3.531 = 5.885 < 7.651] w=0.041 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)Q61.CB) [> 4.306 = 7.177 < 9.330] w=0.041 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)V62.CB) [> 2.740 = 4.567 < 5.937] w=0.041 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)N47.CB, (TR464)D58.CB) [> 4.436 = 7.393 < 9.611] w=0.041 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)S49.CB, (TR464)E75.CB) [> 4.070 = 6.783 < 8.818] w=0.041 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)H51.CB, (TR464)F63.CB) [> 3.454 = 5.757 < 7.484] w=0.034 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)F63.CB) [> 4.303 = 7.172 < 9.323] w=0.034 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)S23.CB, (TR464)F63.CB) [> 4.568 = 7.614 < 9.898] w=0.034 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)H51.CB, (TR464)E66.CB) [> 3.551 = 5.918 < 7.694] w=0.032 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)H51.CB, (TR464)D67.CB) [> 4.479 = 7.466 < 9.705] w=0.032 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)A53.CB, (TR464)E66.CB) [> 4.410 = 7.350 < 9.555] w=0.032 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)S23.CB, (TR464)E52.CB) [> 4.563 = 7.605 < 9.886] w=0.017 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)L50.CB) [> 3.940 = 6.567 < 8.536] w=0.016 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)V71.CB) [> 2.374 = 3.956 < 5.143] w=0.016 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)N47.CB, (TR464)P70.CB) [> 3.079 = 5.131 < 6.671] w=0.016 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)N47.CB, (TR464)V71.CB) [> 4.464 = 7.440 < 9.672] w=0.016 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)Q48.CB, (TR464)S68.CB) [> 4.211 = 7.018 < 9.123] w=0.016 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)Q48.CB, (TR464)P70.CB) [> 4.794 = 7.989 < 10.386] w=0.016 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)Q48.CB, (TR464)V71.CB) [> 4.271 = 7.118 < 9.253] w=0.016 to rejected_bonus # Constraint # added constraint: bonus constraint((TR464)S49.CB, (TR464)S68.CB) [> 2.711 = 4.519 < 5.875] w=0.016 to rejected_bonus # future Constraint commands -> noncontact # future HelixConstraint commands -> noncontact # future StrandConstraint commands -> noncontact # future SheetConstraint commands -> noncontact # future Hbond commands -> noncontact # future SSbond commands -> noncontact Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464noncontact.constraints or /projects/compbio/experiments/protein-predict/casp8/TR464noncontact.constraints.gz for input Trying noncontact.constraints # reading script from file noncontact.constraints # future Constraint commands -> noncontact_bonus # future HelixConstraint commands -> noncontact_bonus # future StrandConstraint commands -> noncontact_bonus # future SheetConstraint commands -> noncontact_bonus # future Hbond commands -> noncontact_bonus # future SSbond commands -> noncontact_bonus Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464noncontact_bonus.constraints or /projects/compbio/experiments/protein-predict/casp8/TR464noncontact_bonus.constraints.gz for input Trying noncontact_bonus.constraints # reading script from file noncontact_bonus.constraints # future Constraint commands -> ehl2_constraints # future HelixConstraint commands -> ehl2_constraints # future StrandConstraint commands -> ehl2_constraints # future SheetConstraint commands -> ehl2_constraints # future Hbond commands -> ehl2_constraints # future SSbond commands -> ehl2_constraints Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464TR464.dssp-ehl2.constraints or /projects/compbio/experiments/protein-predict/casp8/TR464TR464.dssp-ehl2.constraints.gz for input Trying TR464.dssp-ehl2.constraints # reading script from file TR464.dssp-ehl2.constraints # HelixConstraint # Added 13 helix constraints for (TR464)G25 through (TR464)A34 to ehl2_constraints # StrandConstraint # Added 1 Strand constraints for (TR464)V62 through (TR464)R64 to ehl2_constraints # StrandConstraint Warning: can't construct Strand constraints for (TR464)V71 and (TR464)L72 as there are no CA atoms with usable spacing # HelixConstraint # Added 1 helix constraints for (TR464)E75 through (TR464)E76 to ehl2_constraints # future Constraint commands -> align_sheets # future HelixConstraint commands -> align_sheets # future StrandConstraint commands -> align_sheets # future SheetConstraint commands -> align_sheets # future Hbond commands -> align_sheets # future SSbond commands -> align_sheets Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464TR464.undertaker-align.sheets or /projects/compbio/experiments/protein-predict/casp8/TR464TR464.undertaker-align.sheets.gz for input Trying TR464.undertaker-align.sheets # reading script from file TR464.undertaker-align.sheets # SheetConstraint # Added 12 sheet constraints for (TR464)I69--(TR464)V71 (TR464)E66--(TR464)R64 with (TR464)I69 of first strand Hbonded to align_sheets # SheetConstraint # Added 30 sheet constraints for (TR464)K60--(TR464)I65 (TR464)R57--(TR464)E52 with (TR464)Q61 of first strand Hbonded to align_sheets # SheetConstraint # Added 22 sheet constraints for (TR464)V38--(TR464)D42 (TR464)T56--(TR464)E52 with (TR464)Q39 of first strand Hbonded to align_sheets # SheetConstraint # Added 6 sheet constraints for (TR464)I65--(TR464)E66 (TR464)P70--(TR464)I69 with (TR464)E66 of first strand Hbonded to align_sheets # SheetConstraint # Added 6 sheet constraints for (TR464)R40--(TR464)A41 (TR464)E66--(TR464)I65 with (TR464)A41 of first strand Hbonded to align_sheets # SheetConstraint # Added 16 sheet constraints for (TR464)A53--(TR464)T56 (TR464)R64--(TR464)Q61 with (TR464)L54 of first strand Hbonded to align_sheets # SheetConstraint # Added 6 sheet constraints for (TR464)L50--(TR464)H51 (TR464)L73--(TR464)L72 with (TR464)H51 of first strand Hbonded to align_sheets # SheetConstraint # Added 16 sheet constraints for (TR464)E52--(TR464)I55 (TR464)E66--(TR464)F63 with (TR464)A53 of first strand Hbonded to align_sheets # SheetConstraint # Added 12 sheet constraints for (TR464)K60--(TR464)V62 (TR464)R57--(TR464)I55 with (TR464)K60 of first strand Hbonded to align_sheets # SheetConstraint # Added 6 sheet constraints for (TR464)L50--(TR464)H51 (TR464)P70--(TR464)I69 with (TR464)H51 of first strand Hbonded to align_sheets # SheetConstraint # Added 22 sheet constraints for (TR464)E52--(TR464)T56 (TR464)E66--(TR464)V62 with (TR464)A53 of first strand Hbonded to align_sheets # SheetConstraint # Added 12 sheet constraints for (TR464)K60--(TR464)V62 (TR464)R57--(TR464)I55 with (TR464)K60 of first strand Hbonded to align_sheets # SheetConstraint # Warning: strands too close on chain: (TR464)L29--(TR464)A32 (TR464)E22--(TR464)G25 # Added 19 sheet constraints for (TR464)L29--(TR464)A32 (TR464)E22--(TR464)G25 with (TR464)N30 of first strand Hbonded to align_sheets # SheetConstraint # Added 6 sheet constraints for (TR464)I55--(TR464)T56 (TR464)F63--(TR464)V62 with (TR464)I55 of first strand Hbonded to align_sheets # SheetConstraint # Added 12 sheet constraints for (TR464)K60--(TR464)V62 (TR464)R57--(TR464)I55 with (TR464)K60 of first strand Hbonded to align_sheets # SheetConstraint # Added 16 sheet constraints for (TR464)P70--(TR464)L73 (TR464)I65--(TR464)V62 with (TR464)V71 of first strand Hbonded to align_sheets # SheetConstraint # Added 30 sheet constraints for (TR464)A53--(TR464)D58 (TR464)E66--(TR464)Q61 with (TR464)L54 of first strand Hbonded to align_sheets # SheetConstraint # Added 22 sheet constraints for (TR464)E52--(TR464)T56 (TR464)E66--(TR464)V62 with (TR464)A53 of first strand Hbonded to align_sheets # SheetConstraint # Added 12 sheet constraints for (TR464)K60--(TR464)V62 (TR464)R57--(TR464)I55 with (TR464)K60 of first strand Hbonded to align_sheets # SheetConstraint # Added 6 sheet constraints for (TR464)L50--(TR464)H51 (TR464)P70--(TR464)I69 with (TR464)H51 of first strand Hbonded to align_sheets # SheetConstraint # Added 22 sheet constraints for (TR464)E52--(TR464)T56 (TR464)E66--(TR464)V62 with (TR464)A53 of first strand Hbonded to align_sheets # SheetConstraint # Added 12 sheet constraints for (TR464)K60--(TR464)V62 (TR464)R57--(TR464)I55 with (TR464)K60 of first strand Hbonded to align_sheets # SheetConstraint # Added 12 sheet constraints for (TR464)Q61--(TR464)F63 (TR464)R57--(TR464)I55 with (TR464)Q61 of first strand Hbonded to align_sheets # future Constraint commands -> two_stage # future HelixConstraint commands -> two_stage # future StrandConstraint commands -> two_stage # future SheetConstraint commands -> two_stage # future Hbond commands -> two_stage # future SSbond commands -> two_stage Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464TR464.648_17.730_47.rr.nn1000.constraints or /projects/compbio/experiments/protein-predict/casp8/TR464TR464.648_17.730_47.rr.nn1000.constraints.gz for input Trying TR464.648_17.730_47.rr.nn1000.constraints # reading script from file TR464.648_17.730_47.rr.nn1000.constraints # Constraint # added constraint: bonus constraint((TR464)V62.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.659 to two_stage # Constraint # added constraint: bonus constraint((TR464)V62.CB, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.655 to two_stage # Constraint # added constraint: bonus constraint((TR464)F63.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.647 to two_stage # Constraint # added constraint: bonus constraint((TR464)L54.CB, (TR464)I65.CB) [> -999.000 = 6.500 < 8.500] w=0.625 to two_stage # Constraint # added constraint: bonus constraint((TR464)L54.CB, (TR464)F63.CB) [> -999.000 = 6.500 < 8.500] w=0.591 to two_stage # Constraint # added constraint: bonus constraint((TR464)V62.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.587 to two_stage # Constraint # added constraint: bonus constraint((TR464)I55.CB, (TR464)I65.CB) [> -999.000 = 6.500 < 8.500] w=0.514 to two_stage # Constraint # added constraint: bonus constraint((TR464)A53.CB, (TR464)I65.CB) [> -999.000 = 6.500 < 8.500] w=0.494 to two_stage # Constraint # added constraint: bonus constraint((TR464)F63.CB, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.472 to two_stage # Constraint # added constraint: bonus constraint((TR464)I55.CB, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.450 to two_stage # Constraint # added constraint: bonus constraint((TR464)L54.CB, (TR464)R64.CB) [> -999.000 = 6.500 < 8.500] w=0.431 to two_stage # Constraint # added constraint: bonus constraint((TR464)L54.CB, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.426 to two_stage # Constraint # added constraint: bonus constraint((TR464)L54.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.388 to two_stage # Constraint # added constraint: bonus constraint((TR464)I69.CB, (TR464)I78.CB) [> -999.000 = 6.500 < 8.500] w=0.388 to two_stage # Constraint # added constraint: bonus constraint((TR464)L54.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.386 to two_stage # Constraint # added constraint: bonus constraint((TR464)I55.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.382 to two_stage # Constraint # added constraint: bonus constraint((TR464)A53.CB, (TR464)R64.CB) [> -999.000 = 6.500 < 8.500] w=0.373 to two_stage # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)I65.CB) [> -999.000 = 6.500 < 8.500] w=0.343 to two_stage # Constraint # added constraint: bonus constraint((TR464)I55.CB, (TR464)P70.CB) [> -999.000 = 6.500 < 8.500] w=0.335 to two_stage # Constraint # added constraint: bonus constraint((TR464)I55.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.297 to two_stage # Constraint # added constraint: bonus constraint((TR464)I55.CB, (TR464)I69.CB) [> -999.000 = 6.500 < 8.500] w=0.295 to two_stage # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)A53.CB) [> -999.000 = 6.500 < 8.500] w=0.289 to two_stage # Constraint # added constraint: bonus constraint((TR464)A53.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.287 to two_stage # Constraint # added constraint: bonus constraint((TR464)T56.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.260 to two_stage # Constraint # added constraint: bonus constraint((TR464)L54.CB, (TR464)P70.CB) [> -999.000 = 6.500 < 8.500] w=0.247 to two_stage # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.244 to two_stage # Constraint # added constraint: bonus constraint((TR464)A53.CB, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.239 to two_stage # Constraint # added constraint: bonus constraint((TR464)I55.CB, (TR464)I78.CB) [> -999.000 = 6.500 < 8.500] w=0.236 to two_stage # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.222 to two_stage # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)L50.CB) [> -999.000 = 6.500 < 8.500] w=0.219 to two_stage # Constraint # added constraint: bonus constraint((TR464)T56.CB, (TR464)P70.CB) [> -999.000 = 6.500 < 8.500] w=0.218 to two_stage # Constraint # added constraint: bonus constraint((TR464)T56.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.216 to two_stage # Constraint # added constraint: bonus constraint((TR464)I55.CB, (TR464)R64.CB) [> -999.000 = 6.500 < 8.500] w=0.214 to two_stage # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.208 to two_stage # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)R64.CB) [> -999.000 = 6.500 < 8.500] w=0.207 to two_stage # Constraint # added constraint: bonus constraint((TR464)V71.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.208 to two_stage # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.201 to two_stage # Constraint # added constraint: bonus constraint((TR464)V62.CB, (TR464)Q82.CB) [> -999.000 = 6.500 < 8.500] w=0.195 to two_stage # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)V62.CB) [> -999.000 = 6.500 < 8.500] w=0.189 to two_stage # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)F63.CB) [> -999.000 = 6.500 < 8.500] w=0.187 to two_stage # Constraint # added constraint: bonus constraint((TR464)T56.CB, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.188 to two_stage # Constraint # added constraint: bonus constraint((TR464)A53.CB, (TR464)V62.CB) [> -999.000 = 6.500 < 8.500] w=0.184 to two_stage # Constraint # added constraint: bonus constraint((TR464)V62.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.183 to two_stage # Constraint # added constraint: bonus constraint((TR464)T56.CB, (TR464)I65.CB) [> -999.000 = 6.500 < 8.500] w=0.181 to two_stage # Constraint # added constraint: bonus constraint((TR464)L54.CB, (TR464)I69.CB) [> -999.000 = 6.500 < 8.500] w=0.178 to two_stage # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)T56.CB) [> -999.000 = 6.500 < 8.500] w=0.175 to two_stage # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)V62.CB) [> -999.000 = 6.500 < 8.500] w=0.174 to two_stage # Constraint # added constraint: bonus constraint((TR464)V62.CB, (TR464)A79.CB) [> -999.000 = 6.500 < 8.500] w=0.168 to two_stage # Constraint # added constraint: bonus constraint((TR464)V71.CB, (TR464)A84.CB) [> -999.000 = 6.500 < 8.500] w=0.169 to two_stage # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.167 to two_stage # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.163 to two_stage # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.164 to two_stage # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)N47.CB) [> -999.000 = 6.500 < 8.500] w=0.160 to two_stage # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.160 to two_stage # Constraint # added constraint: bonus constraint((TR464)G43.CA, (TR464)V62.CB) [> -999.000 = 6.500 < 8.500] w=0.157 to two_stage # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)S49.CB) [> -999.000 = 6.500 < 8.500] w=0.153 to two_stage # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)I65.CB) [> -999.000 = 6.500 < 8.500] w=0.151 to two_stage # Constraint # added constraint: bonus constraint((TR464)R59.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.152 to two_stage # Constraint # added constraint: bonus constraint((TR464)T56.CB, (TR464)I69.CB) [> -999.000 = 6.500 < 8.500] w=0.149 to two_stage # Constraint # added constraint: bonus constraint((TR464)F63.CB, (TR464)E76.CB) [> -999.000 = 6.500 < 8.500] w=0.144 to two_stage # Constraint # added constraint: bonus constraint((TR464)V71.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.145 to two_stage # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)V62.CB) [> -999.000 = 6.500 < 8.500] w=0.143 to two_stage # Constraint # added constraint: bonus constraint((TR464)N47.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.142 to two_stage # Constraint # added constraint: bonus constraint((TR464)D58.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.143 to two_stage # Constraint # added constraint: bonus constraint((TR464)R59.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.141 to two_stage # Constraint # added constraint: bonus constraint((TR464)V71.CB, (TR464)T80.CB) [> -999.000 = 6.500 < 8.500] w=0.141 to two_stage # Constraint # added constraint: bonus constraint((TR464)I55.CB, (TR464)S68.CB) [> -999.000 = 6.500 < 8.500] w=0.137 to two_stage # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)F63.CB) [> -999.000 = 6.500 < 8.500] w=0.135 to two_stage # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.135 to two_stage # Constraint # added constraint: bonus constraint((TR464)H51.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.133 to two_stage # Constraint # added constraint: bonus constraint((TR464)F63.CB, (TR464)P74.CB) [> -999.000 = 6.500 < 8.500] w=0.134 to two_stage # Constraint # added constraint: bonus constraint((TR464)V62.CB, (TR464)T80.CB) [> -999.000 = 6.500 < 8.500] w=0.131 to two_stage # Constraint # added constraint: bonus constraint((TR464)V62.CB, (TR464)P74.CB) [> -999.000 = 6.500 < 8.500] w=0.128 to two_stage # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)I69.CB) [> -999.000 = 6.500 < 8.500] w=0.126 to two_stage # Constraint # added constraint: bonus constraint((TR464)L72.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.125 to two_stage # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.123 to two_stage # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)R57.CB) [> -999.000 = 6.500 < 8.500] w=0.119 to two_stage # Constraint # added constraint: bonus constraint((TR464)D58.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.119 to two_stage # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)R59.CB) [> -999.000 = 6.500 < 8.500] w=0.117 to two_stage # Constraint # added constraint: bonus constraint((TR464)G43.CA, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.117 to two_stage # Constraint # added constraint: bonus constraint((TR464)T56.CB, (TR464)I78.CB) [> -999.000 = 6.500 < 8.500] w=0.118 to two_stage # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)P70.CB) [> -999.000 = 6.500 < 8.500] w=0.116 to two_stage # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)P70.CB) [> -999.000 = 6.500 < 8.500] w=0.116 to two_stage # Constraint # added constraint: bonus constraint((TR464)I55.CB, (TR464)D67.CB) [> -999.000 = 6.500 < 8.500] w=0.116 to two_stage # Constraint # added constraint: bonus constraint((TR464)T56.CB, (TR464)S68.CB) [> -999.000 = 6.500 < 8.500] w=0.114 to two_stage # Constraint # added constraint: bonus constraint((TR464)V62.CB, (TR464)E76.CB) [> -999.000 = 6.500 < 8.500] w=0.113 to two_stage # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)D58.CB) [> -999.000 = 6.500 < 8.500] w=0.112 to two_stage # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)S68.CB) [> -999.000 = 6.500 < 8.500] w=0.109 to two_stage # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)P70.CB) [> -999.000 = 6.500 < 8.500] w=0.110 to two_stage # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)V62.CB) [> -999.000 = 6.500 < 8.500] w=0.110 to two_stage # Constraint # added constraint: bonus constraint((TR464)N47.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.111 to two_stage # Constraint # added constraint: bonus constraint((TR464)T56.CB, (TR464)D67.CB) [> -999.000 = 6.500 < 8.500] w=0.111 to two_stage # Constraint # added constraint: bonus constraint((TR464)F63.CB, (TR464)I78.CB) [> -999.000 = 6.500 < 8.500] w=0.110 to two_stage # Constraint # added constraint: bonus constraint((TR464)R59.CB, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.107 to two_stage # Constraint # added constraint: bonus constraint((TR464)H51.CB, (TR464)I65.CB) [> -999.000 = 6.500 < 8.500] w=0.105 to two_stage # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)D67.CB) [> -999.000 = 6.500 < 8.500] w=0.102 to two_stage # Constraint # added constraint: bonus constraint((TR464)G43.CA, (TR464)F63.CB) [> -999.000 = 6.500 < 8.500] w=0.103 to two_stage # Constraint # added constraint: bonus constraint((TR464)G43.CA, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.104 to two_stage # Constraint # added constraint: bonus constraint((TR464)L72.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.104 to two_stage # Constraint # added constraint: bonus constraint((TR464)H51.CB, (TR464)F63.CB) [> -999.000 = 6.500 < 8.500] w=0.101 to two_stage # Constraint # added constraint: bonus constraint((TR464)V71.CB, (TR464)Q82.CB) [> -999.000 = 6.500 < 8.500] w=0.102 to two_stage # Constraint # added constraint: bonus constraint((TR464)L54.CB, (TR464)D67.CB) [> -999.000 = 6.500 < 8.500] w=0.099 to two_stage # Constraint # added constraint: bonus constraint((TR464)I69.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.099 to two_stage # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)I69.CB) [> -999.000 = 6.500 < 8.500] w=0.097 to two_stage # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)T80.CB) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((TR464)S49.CB, (TR464)V62.CB) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((TR464)T56.CB, (TR464)E76.CB) [> -999.000 = 6.500 < 8.500] w=0.096 to two_stage # Constraint # added constraint: bonus constraint((TR464)V62.CB, (TR464)E75.CB) [> -999.000 = 6.500 < 8.500] w=0.096 to two_stage # Constraint # added constraint: bonus constraint((TR464)I69.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.096 to two_stage # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)I69.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((TR464)H51.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((TR464)I69.CB, (TR464)T80.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((TR464)A53.CB, (TR464)P74.CB) [> -999.000 = 6.500 < 8.500] w=0.093 to two_stage # Constraint # added constraint: bonus constraint((TR464)L54.CB, (TR464)E75.CB) [> -999.000 = 6.500 < 8.500] w=0.093 to two_stage # Constraint # added constraint: bonus constraint((TR464)G43.CA, (TR464)R59.CB) [> -999.000 = 6.500 < 8.500] w=0.092 to two_stage # Constraint # added constraint: bonus constraint((TR464)R59.CB, (TR464)T80.CB) [> -999.000 = 6.500 < 8.500] w=0.092 to two_stage # Constraint # added constraint: bonus constraint((TR464)R59.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.092 to two_stage # Constraint # added constraint: bonus constraint((TR464)H51.CB, (TR464)V62.CB) [> -999.000 = 6.500 < 8.500] w=0.091 to two_stage # Constraint # added constraint: bonus constraint((TR464)G43.CA, (TR464)A79.CB) [> -999.000 = 6.500 < 8.500] w=0.089 to two_stage # Constraint # added constraint: bonus constraint((TR464)P70.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.090 to two_stage # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)R57.CB) [> -999.000 = 6.500 < 8.500] w=0.087 to two_stage # Constraint # added constraint: bonus constraint((TR464)G43.CA, (TR464)Q82.CB) [> -999.000 = 6.500 < 8.500] w=0.087 to two_stage # Constraint # added constraint: bonus constraint((TR464)F63.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.087 to two_stage # Constraint # added constraint: bonus constraint((TR464)F63.CB, (TR464)Q82.CB) [> -999.000 = 6.500 < 8.500] w=0.087 to two_stage # Constraint # added constraint: bonus constraint((TR464)G43.CA, (TR464)I65.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)D67.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((TR464)R40.CB, (TR464)S49.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((TR464)N47.CB, (TR464)F63.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((TR464)A53.CB, (TR464)D67.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((TR464)D58.CB, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((TR464)I55.CB, (TR464)E75.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((TR464)T56.CB, (TR464)E75.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((TR464)F63.CB, (TR464)A79.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((TR464)A53.CB, (TR464)I69.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((TR464)P70.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((TR464)S49.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((TR464)I69.CB, (TR464)Q82.CB) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)D58.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((TR464)P70.CB, (TR464)Q82.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)Q82.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((TR464)H51.CB, (TR464)E76.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((TR464)F63.CB, (TR464)E75.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((TR464)R40.CB, (TR464)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((TR464)S44.CB, (TR464)V62.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((TR464)H51.CB, (TR464)R64.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((TR464)R64.CB, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((TR464)D67.CB, (TR464)I78.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((TR464)P70.CB, (TR464)A84.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((TR464)S68.CB, (TR464)I78.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((TR464)G43.CA, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((TR464)N47.CB, (TR464)R59.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((TR464)R57.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((TR464)D58.CB, (TR464)E76.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((TR464)P70.CB, (TR464)T80.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)A84.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((TR464)R40.CB, (TR464)R57.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((TR464)N47.CB, (TR464)V62.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((TR464)H51.CB, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((TR464)I55.CB, (TR464)E66.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((TR464)R57.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((TR464)F63.CB, (TR464)T80.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((TR464)I69.CB, (TR464)A84.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((TR464)N47.CB, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)R64.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((TR464)R59.CB, (TR464)A84.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((TR464)F63.CB, (TR464)A84.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((TR464)I65.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((TR464)R59.CB, (TR464)Q82.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((TR464)I69.CB, (TR464)A79.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((TR464)G43.CA, (TR464)P70.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)D67.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((TR464)N47.CB, (TR464)I65.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((TR464)N47.CB, (TR464)A84.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)D67.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)S68.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((TR464)A53.CB, (TR464)Q82.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((TR464)L54.CB, (TR464)P74.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((TR464)D58.CB, (TR464)P70.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((TR464)L73.CB, (TR464)Q82.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((TR464)S49.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((TR464)V62.CB, (TR464)A84.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((TR464)L72.CB, (TR464)Q82.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((TR464)H51.CB, (TR464)P74.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((TR464)I55.CB, (TR464)E76.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((TR464)R59.CB, (TR464)P70.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((TR464)I65.CB, (TR464)Q82.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)A79.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((TR464)G43.CA, (TR464)T80.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((TR464)A53.CB, (TR464)A84.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((TR464)P70.CB, (TR464)A79.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((TR464)R59.CB, (TR464)E76.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((TR464)R40.CB, (TR464)I69.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((TR464)I45.CB, (TR464)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)T80.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((TR464)H51.CB, (TR464)A84.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)D58.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)T80.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((TR464)H51.CB, (TR464)Q82.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((TR464)S68.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((TR464)R59.CB, (TR464)P74.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((TR464)I65.CB, (TR464)P74.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((TR464)D67.CB, (TR464)E76.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)Q82.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)R59.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((TR464)H51.CB, (TR464)K60.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((TR464)R59.CB, (TR464)E75.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)E76.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)Q82.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((TR464)I55.CB, (TR464)P74.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((TR464)R59.CB, (TR464)A79.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((TR464)S68.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((TR464)S49.CB, (TR464)Q82.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((TR464)H51.CB, (TR464)P70.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((TR464)I65.CB, (TR464)A79.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((TR464)I65.CB, (TR464)T80.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((TR464)L72.CB, (TR464)A84.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((TR464)L73.CB, (TR464)A84.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((TR464)H51.CB, (TR464)E75.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((TR464)D58.CB, (TR464)S68.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((TR464)D58.CB, (TR464)E75.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((TR464)R40.CB, (TR464)D67.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((TR464)S44.CB, (TR464)D67.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((TR464)I45.CB, (TR464)D67.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((TR464)T56.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((TR464)T56.CB, (TR464)Q82.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((TR464)S68.CB, (TR464)A84.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)T56.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((TR464)R57.CB, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((TR464)T56.CB, (TR464)P74.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((TR464)I65.CB, (TR464)A84.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)A79.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((TR464)N47.CB, (TR464)E76.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((TR464)N47.CB, (TR464)P70.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((TR464)L54.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((TR464)L54.CB, (TR464)Q82.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((TR464)I55.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((TR464)D58.CB, (TR464)I78.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((TR464)S68.CB, (TR464)T80.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((TR464)G43.CA, (TR464)R64.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((TR464)R64.CB, (TR464)E75.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((TR464)I55.CB, (TR464)Q82.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((TR464)R64.CB, (TR464)P74.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((TR464)D67.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((TR464)S68.CB, (TR464)Q82.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((TR464)R40.CB, (TR464)D58.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((TR464)G43.CA, (TR464)D67.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((TR464)N47.CB, (TR464)R64.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((TR464)T56.CB, (TR464)A79.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((TR464)D58.CB, (TR464)P74.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)A79.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((TR464)T56.CB, (TR464)T80.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((TR464)R57.CB, (TR464)E66.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((TR464)T56.CB, (TR464)A84.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((TR464)R59.CB, (TR464)S68.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((TR464)R59.CB, (TR464)I78.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((TR464)R64.CB, (TR464)E76.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((TR464)D67.CB, (TR464)A84.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((TR464)G43.CA, (TR464)D58.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((TR464)G43.CA, (TR464)A84.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((TR464)I45.CB, (TR464)D58.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((TR464)N47.CB, (TR464)P74.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((TR464)H51.CB, (TR464)D67.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((TR464)L54.CB, (TR464)T80.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((TR464)N47.CB, (TR464)E75.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((TR464)T56.CB, (TR464)E66.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((TR464)I55.CB, (TR464)T80.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((TR464)R57.CB, (TR464)S68.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((TR464)R57.CB, (TR464)P70.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((TR464)R57.CB, (TR464)E76.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((TR464)D58.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((TR464)D58.CB, (TR464)Q82.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((TR464)D58.CB, (TR464)A84.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((TR464)K60.CB, (TR464)P70.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((TR464)K60.CB, (TR464)Q82.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((TR464)D67.CB, (TR464)Q82.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((TR464)N47.CB, (TR464)T80.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((TR464)L54.CB, (TR464)A84.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((TR464)I55.CB, (TR464)A79.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((TR464)R57.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((TR464)K60.CB, (TR464)A84.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((TR464)S44.CB, (TR464)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((TR464)D67.CB, (TR464)T80.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((TR464)S68.CB, (TR464)A79.CB) [> -999.000 = 6.500 < 8.500] w=0.037 to two_stage # Constraint # added constraint: bonus constraint((TR464)G43.CA, (TR464)A53.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((TR464)N47.CB, (TR464)S68.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((TR464)I55.CB, (TR464)A84.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((TR464)G43.CA, (TR464)E52.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((TR464)G43.CA, (TR464)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((TR464)G43.CA, (TR464)T56.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((TR464)G43.CA, (TR464)I69.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((TR464)S44.CB, (TR464)D58.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((TR464)D58.CB, (TR464)A79.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((TR464)D58.CB, (TR464)T80.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((TR464)S49.CB, (TR464)P70.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((TR464)N47.CB, (TR464)D67.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((TR464)D58.CB, (TR464)D67.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((TR464)R59.CB, (TR464)I69.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((TR464)P74.CB, (TR464)A84.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)R57.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((TR464)N47.CB, (TR464)D58.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((TR464)S49.CB, (TR464)D58.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((TR464)H51.CB, (TR464)I69.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((TR464)R57.CB, (TR464)I78.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((TR464)D67.CB, (TR464)A79.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((TR464)R64.CB, (TR464)T80.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((TR464)E75.CB, (TR464)A84.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((TR464)G43.CA, (TR464)R57.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((TR464)S49.CB, (TR464)D67.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((TR464)D58.CB, (TR464)I69.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((TR464)R64.CB, (TR464)A79.CB) [> -999.000 = 6.500 < 8.500] w=0.026 to two_stage # Constraint # added constraint: bonus constraint((TR464)E66.CB, (TR464)Q82.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((TR464)S44.CB, (TR464)R57.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((TR464)N47.CB, (TR464)T56.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((TR464)N47.CB, (TR464)Q82.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((TR464)R57.CB, (TR464)P74.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((TR464)R57.CB, (TR464)E75.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((TR464)R57.CB, (TR464)T80.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((TR464)R64.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((TR464)N47.CB, (TR464)A79.CB) [> -999.000 = 6.500 < 8.500] w=0.022 to two_stage # Constraint # added constraint: bonus constraint((TR464)N47.CB, (TR464)R57.CB) [> -999.000 = 6.500 < 8.500] w=0.020 to two_stage # Constraint # added constraint: bonus constraint((TR464)N47.CB, (TR464)I69.CB) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((TR464)R57.CB, (TR464)D67.CB) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((TR464)R57.CB, (TR464)I69.CB) [> -999.000 = 6.500 < 8.500] w=0.020 to two_stage # Constraint # added constraint: bonus constraint((TR464)R64.CB, (TR464)Q82.CB) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((TR464)S49.CB, (TR464)I69.CB) [> -999.000 = 6.500 < 8.500] w=0.016 to two_stage # Constraint # added constraint: bonus constraint((TR464)R57.CB, (TR464)Q82.CB) [> -999.000 = 6.500 < 8.500] w=0.016 to two_stage # Constraint # added constraint: bonus constraint((TR464)R57.CB, (TR464)A84.CB) [> -999.000 = 6.500 < 8.500] w=0.017 to two_stage # Constraint # added constraint: bonus constraint((TR464)R64.CB, (TR464)A84.CB) [> -999.000 = 6.500 < 8.500] w=0.016 to two_stage # Constraint # added constraint: bonus constraint((TR464)R57.CB, (TR464)A79.CB) [> -999.000 = 6.500 < 8.500] w=0.015 to two_stage # Constraint # added constraint: bonus constraint((TR464)K60.CB, (TR464)I69.CB) [> -999.000 = 6.500 < 8.500] w=0.014 to two_stage # future Constraint commands -> nn1000 # future HelixConstraint commands -> nn1000 # future StrandConstraint commands -> nn1000 # future SheetConstraint commands -> nn1000 # future Hbond commands -> nn1000 # future SSbond commands -> nn1000 Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/TR464nn1000.constraints or /projects/compbio/experiments/protein-predict/casp8/TR464nn1000.constraints.gz for input Trying nn1000.constraints # reading script from file nn1000.constraints # Constraint # added constraint: bonus constraint((TR464)F63.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.933 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V62.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.928 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V62.CB, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.920 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L54.CB, (TR464)I65.CB) [> -999.000 = 6.500 < 8.500] w=0.915 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A53.CB, (TR464)I65.CB) [> -999.000 = 6.500 < 8.500] w=0.908 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I55.CB, (TR464)I65.CB) [> -999.000 = 6.500 < 8.500] w=0.905 to nn1000 # Constraint # added constraint: bonus constraint((TR464)F63.CB, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.903 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L54.CB, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.900 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.896 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L54.CB, (TR464)F63.CB) [> -999.000 = 6.500 < 8.500] w=0.894 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I33.CB, (TR464)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.891 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L54.CB, (TR464)I69.CB) [> -999.000 = 6.500 < 8.500] w=0.888 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L29.CB, (TR464)V38.CB) [> -999.000 = 6.500 < 8.500] w=0.883 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)L54.CB) [> -999.000 = 6.500 < 8.500] w=0.880 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)A53.CB) [> -999.000 = 6.500 < 8.500] w=0.879 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L54.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.875 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)I65.CB) [> -999.000 = 6.500 < 8.500] w=0.871 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A53.CB, (TR464)F63.CB) [> -999.000 = 6.500 < 8.500] w=0.871 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I55.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.868 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I33.CB, (TR464)L54.CB) [> -999.000 = 6.500 < 8.500] w=0.866 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I55.CB, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.863 to nn1000 # Constraint # added constraint: bonus constraint((TR464)E52.CB, (TR464)I65.CB) [> -999.000 = 6.500 < 8.500] w=0.860 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A53.CB, (TR464)V62.CB) [> -999.000 = 6.500 < 8.500] w=0.861 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A53.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.858 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V62.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.857 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)L50.CB) [> -999.000 = 6.500 < 8.500] w=0.849 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A53.CB, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.846 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L21.CB, (TR464)L54.CB) [> -999.000 = 6.500 < 8.500] w=0.843 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V62.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.840 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I69.CB, (TR464)I78.CB) [> -999.000 = 6.500 < 8.500] w=0.841 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L21.CB, (TR464)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.837 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L29.CB, (TR464)L54.CB) [> -999.000 = 6.500 < 8.500] w=0.833 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L21.CB, (TR464)I33.CB) [> -999.000 = 6.500 < 8.500] w=0.831 to nn1000 # Constraint # added constraint: bonus constraint((TR464)E52.CB, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.832 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)A53.CB) [> -999.000 = 6.500 < 8.500] w=0.828 to nn1000 # Constraint # added constraint: bonus constraint((TR464)E52.CB, (TR464)V62.CB) [> -999.000 = 6.500 < 8.500] w=0.828 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I55.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.829 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L29.CB, (TR464)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.827 to nn1000 # Constraint # added constraint: bonus constraint((TR464)E52.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.825 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L54.CB, (TR464)I78.CB) [> -999.000 = 6.500 < 8.500] w=0.824 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I33.CB, (TR464)I65.CB) [> -999.000 = 6.500 < 8.500] w=0.821 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L54.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.822 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)V62.CB) [> -999.000 = 6.500 < 8.500] w=0.818 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)E52.CB) [> -999.000 = 6.500 < 8.500] w=0.816 to nn1000 # Constraint # added constraint: bonus constraint((TR464)E52.CB, (TR464)F63.CB) [> -999.000 = 6.500 < 8.500] w=0.816 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I33.CB, (TR464)L50.CB) [> -999.000 = 6.500 < 8.500] w=0.815 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L54.CB, (TR464)R64.CB) [> -999.000 = 6.500 < 8.500] w=0.814 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L21.CB, (TR464)L50.CB) [> -999.000 = 6.500 < 8.500] w=0.812 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)F63.CB) [> -999.000 = 6.500 < 8.500] w=0.808 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I55.CB, (TR464)R64.CB) [> -999.000 = 6.500 < 8.500] w=0.807 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.803 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I55.CB, (TR464)I69.CB) [> -999.000 = 6.500 < 8.500] w=0.803 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q61.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.803 to nn1000 # Constraint # added constraint: bonus constraint((TR464)N30.CB, (TR464)A41.CB) [> -999.000 = 6.500 < 8.500] w=0.802 to nn1000 # Constraint # added constraint: bonus constraint((TR464)N30.CB, (TR464)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.801 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)T56.CB) [> -999.000 = 6.500 < 8.500] w=0.800 to nn1000 # Constraint # added constraint: bonus constraint((TR464)T56.CB, (TR464)I65.CB) [> -999.000 = 6.500 < 8.500] w=0.800 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)L54.CB) [> -999.000 = 6.500 < 8.500] w=0.798 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A53.CB, (TR464)R64.CB) [> -999.000 = 6.500 < 8.500] w=0.798 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I55.CB, (TR464)I78.CB) [> -999.000 = 6.500 < 8.500] w=0.797 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I33.CB, (TR464)E52.CB) [> -999.000 = 6.500 < 8.500] w=0.795 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.795 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L21.CB, (TR464)E52.CB) [> -999.000 = 6.500 < 8.500] w=0.793 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A28.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.792 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L54.CB, (TR464)P70.CB) [> -999.000 = 6.500 < 8.500] w=0.791 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)I65.CB) [> -999.000 = 6.500 < 8.500] w=0.789 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L54.CB, (TR464)D67.CB) [> -999.000 = 6.500 < 8.500] w=0.790 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)I65.CB) [> -999.000 = 6.500 < 8.500] w=0.787 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V62.CB, (TR464)A77.CB) [> -999.000 = 6.500 < 8.500] w=0.788 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L21.CB, (TR464)N30.CB) [> -999.000 = 6.500 < 8.500] w=0.785 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)I65.CB) [> -999.000 = 6.500 < 8.500] w=0.782 to nn1000 # Constraint # added constraint: bonus constraint((TR464)N30.CB, (TR464)L54.CB) [> -999.000 = 6.500 < 8.500] w=0.780 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L26.CB, (TR464)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.778 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L54.CB, (TR464)A77.CB) [> -999.000 = 6.500 < 8.500] w=0.779 to nn1000 # Constraint # added constraint: bonus constraint((TR464)D67.CB, (TR464)I78.CB) [> -999.000 = 6.500 < 8.500] w=0.776 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L29.CB, (TR464)A41.CB) [> -999.000 = 6.500 < 8.500] w=0.774 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L20.CB, (TR464)L29.CB) [> -999.000 = 6.500 < 8.500] w=0.773 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I33.CB, (TR464)T56.CB) [> -999.000 = 6.500 < 8.500] w=0.774 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.773 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.774 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L54.CB, (TR464)E75.CB) [> -999.000 = 6.500 < 8.500] w=0.775 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L21.CB, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.770 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L26.CB, (TR464)L54.CB) [> -999.000 = 6.500 < 8.500] w=0.770 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I55.CB, (TR464)A77.CB) [> -999.000 = 6.500 < 8.500] w=0.771 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I55.CB, (TR464)P70.CB) [> -999.000 = 6.500 < 8.500] w=0.770 to nn1000 # Constraint # added constraint: bonus constraint((TR464)T56.CB, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.770 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L29.CB, (TR464)A53.CB) [> -999.000 = 6.500 < 8.500] w=0.769 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I33.CB, (TR464)A53.CB) [> -999.000 = 6.500 < 8.500] w=0.769 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.767 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)L50.CB) [> -999.000 = 6.500 < 8.500] w=0.767 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V62.CB, (TR464)I78.CB) [> -999.000 = 6.500 < 8.500] w=0.766 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L20.CB, (TR464)A53.CB) [> -999.000 = 6.500 < 8.500] w=0.764 to nn1000 # Constraint # added constraint: bonus constraint((TR464)E52.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.764 to nn1000 # Constraint # added constraint: bonus constraint((TR464)T56.CB, (TR464)I69.CB) [> -999.000 = 6.500 < 8.500] w=0.764 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L21.CB, (TR464)A41.CB) [> -999.000 = 6.500 < 8.500] w=0.762 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L26.CB, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.762 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)F63.CB) [> -999.000 = 6.500 < 8.500] w=0.763 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)H51.CB) [> -999.000 = 6.500 < 8.500] w=0.761 to nn1000 # Constraint # added constraint: bonus constraint((TR464)D42.CB, (TR464)L54.CB) [> -999.000 = 6.500 < 8.500] w=0.762 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L29.CB, (TR464)E52.CB) [> -999.000 = 6.500 < 8.500] w=0.758 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)L54.CB) [> -999.000 = 6.500 < 8.500] w=0.757 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.757 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I33.CB, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.755 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.756 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A53.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.754 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.753 to nn1000 # Constraint # added constraint: bonus constraint((TR464)E52.CB, (TR464)A77.CB) [> -999.000 = 6.500 < 8.500] w=0.753 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)A77.CB) [> -999.000 = 6.500 < 8.500] w=0.752 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V71.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.752 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L26.CB, (TR464)V38.CB) [> -999.000 = 6.500 < 8.500] w=0.750 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)V62.CB) [> -999.000 = 6.500 < 8.500] w=0.750 to nn1000 # Constraint # added constraint: bonus constraint((TR464)T56.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.748 to nn1000 # Constraint # added constraint: bonus constraint((TR464)F63.CB, (TR464)I78.CB) [> -999.000 = 6.500 < 8.500] w=0.749 to nn1000 # Constraint # added constraint: bonus constraint((TR464)T56.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.746 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L21.CB, (TR464)V38.CB) [> -999.000 = 6.500 < 8.500] w=0.745 to nn1000 # Constraint # added constraint: bonus constraint((TR464)E52.CB, (TR464)I78.CB) [> -999.000 = 6.500 < 8.500] w=0.745 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I55.CB, (TR464)E75.CB) [> -999.000 = 6.500 < 8.500] w=0.745 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)E52.CB) [> -999.000 = 6.500 < 8.500] w=0.740 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.741 to nn1000 # Constraint # added constraint: bonus constraint((TR464)N30.CB, (TR464)L50.CB) [> -999.000 = 6.500 < 8.500] w=0.740 to nn1000 # Constraint # added constraint: bonus constraint((TR464)F63.CB, (TR464)A77.CB) [> -999.000 = 6.500 < 8.500] w=0.741 to nn1000 # Constraint # added constraint: bonus constraint((TR464)F63.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.741 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L29.CB, (TR464)L50.CB) [> -999.000 = 6.500 < 8.500] w=0.739 to nn1000 # Constraint # added constraint: bonus constraint((TR464)G36.CA, (TR464)L50.CB) [> -999.000 = 6.500 < 8.500] w=0.739 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L21.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.737 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L26.CB, (TR464)I78.CB) [> -999.000 = 6.500 < 8.500] w=0.737 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I33.CB, (TR464)I78.CB) [> -999.000 = 6.500 < 8.500] w=0.738 to nn1000 # Constraint # added constraint: bonus constraint((TR464)D42.CB, (TR464)E52.CB) [> -999.000 = 6.500 < 8.500] w=0.738 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A53.CB, (TR464)A77.CB) [> -999.000 = 6.500 < 8.500] w=0.738 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q61.CB, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.738 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I33.CB, (TR464)F63.CB) [> -999.000 = 6.500 < 8.500] w=0.736 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)F63.CB) [> -999.000 = 6.500 < 8.500] w=0.736 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V62.CB, (TR464)E75.CB) [> -999.000 = 6.500 < 8.500] w=0.736 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)V62.CB) [> -999.000 = 6.500 < 8.500] w=0.735 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V71.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.733 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L29.CB, (TR464)V62.CB) [> -999.000 = 6.500 < 8.500] w=0.730 to nn1000 # Constraint # added constraint: bonus constraint((TR464)N30.CB, (TR464)I65.CB) [> -999.000 = 6.500 < 8.500] w=0.731 to nn1000 # Constraint # added constraint: bonus constraint((TR464)N30.CB, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.731 to nn1000 # Constraint # added constraint: bonus constraint((TR464)T56.CB, (TR464)P70.CB) [> -999.000 = 6.500 < 8.500] w=0.732 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.729 to nn1000 # Constraint # added constraint: bonus constraint((TR464)H51.CB, (TR464)I65.CB) [> -999.000 = 6.500 < 8.500] w=0.730 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L26.CB, (TR464)A41.CB) [> -999.000 = 6.500 < 8.500] w=0.728 to nn1000 # Constraint # added constraint: bonus constraint((TR464)G36.CA, (TR464)E52.CB) [> -999.000 = 6.500 < 8.500] w=0.728 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L21.CB, (TR464)T56.CB) [> -999.000 = 6.500 < 8.500] w=0.726 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I33.CB, (TR464)V62.CB) [> -999.000 = 6.500 < 8.500] w=0.726 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I33.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.727 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.727 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)L50.CB) [> -999.000 = 6.500 < 8.500] w=0.728 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)F63.CB) [> -999.000 = 6.500 < 8.500] w=0.727 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.725 to nn1000 # Constraint # added constraint: bonus constraint((TR464)F63.CB, (TR464)E75.CB) [> -999.000 = 6.500 < 8.500] w=0.726 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L20.CB, (TR464)A41.CB) [> -999.000 = 6.500 < 8.500] w=0.725 to nn1000 # Constraint # added constraint: bonus constraint((TR464)E52.CB, (TR464)I69.CB) [> -999.000 = 6.500 < 8.500] w=0.724 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L73.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.725 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L21.CB, (TR464)I69.CB) [> -999.000 = 6.500 < 8.500] w=0.723 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L29.CB, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.724 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I33.CB, (TR464)D42.CB) [> -999.000 = 6.500 < 8.500] w=0.724 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L29.CB, (TR464)I65.CB) [> -999.000 = 6.500 < 8.500] w=0.721 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)I65.CB) [> -999.000 = 6.500 < 8.500] w=0.722 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A53.CB, (TR464)I69.CB) [> -999.000 = 6.500 < 8.500] w=0.722 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V62.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.722 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)Q48.CB) [> -999.000 = 6.500 < 8.500] w=0.721 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L21.CB, (TR464)I78.CB) [> -999.000 = 6.500 < 8.500] w=0.718 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L21.CB, (TR464)D42.CB) [> -999.000 = 6.500 < 8.500] w=0.717 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L20.CB, (TR464)V38.CB) [> -999.000 = 6.500 < 8.500] w=0.715 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L21.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.715 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L29.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.715 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)N47.CB) [> -999.000 = 6.500 < 8.500] w=0.715 to nn1000 # Constraint # added constraint: bonus constraint((TR464)D42.CB, (TR464)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.715 to nn1000 # Constraint # added constraint: bonus constraint((TR464)E52.CB, (TR464)R64.CB) [> -999.000 = 6.500 < 8.500] w=0.716 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A53.CB, (TR464)I78.CB) [> -999.000 = 6.500 < 8.500] w=0.715 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L26.CB, (TR464)L50.CB) [> -999.000 = 6.500 < 8.500] w=0.714 to nn1000 # Constraint # added constraint: bonus constraint((TR464)N30.CB, (TR464)Q39.CB) [> -999.000 = 6.500 < 8.500] w=0.711 to nn1000 # Constraint # added constraint: bonus constraint((TR464)T37.CB, (TR464)I65.CB) [> -999.000 = 6.500 < 8.500] w=0.711 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.711 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L72.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.711 to nn1000 # Constraint # added constraint: bonus constraint((TR464)E52.CB, (TR464)E75.CB) [> -999.000 = 6.500 < 8.500] w=0.710 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A53.CB, (TR464)E66.CB) [> -999.000 = 6.500 < 8.500] w=0.710 to nn1000 # Constraint # added constraint: bonus constraint((TR464)N30.CB, (TR464)E52.CB) [> -999.000 = 6.500 < 8.500] w=0.708 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L26.CB, (TR464)E52.CB) [> -999.000 = 6.500 < 8.500] w=0.705 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L29.CB, (TR464)I78.CB) [> -999.000 = 6.500 < 8.500] w=0.705 to nn1000 # Constraint # added constraint: bonus constraint((TR464)N30.CB, (TR464)R40.CB) [> -999.000 = 6.500 < 8.500] w=0.703 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)V62.CB) [> -999.000 = 6.500 < 8.500] w=0.704 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R40.CB, (TR464)A53.CB) [> -999.000 = 6.500 < 8.500] w=0.702 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L54.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.701 to nn1000 # Constraint # added constraint: bonus constraint((TR464)T56.CB, (TR464)I78.CB) [> -999.000 = 6.500 < 8.500] w=0.700 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L21.CB, (TR464)R40.CB) [> -999.000 = 6.500 < 8.500] w=0.696 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)I78.CB) [> -999.000 = 6.500 < 8.500] w=0.696 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R40.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.696 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L26.CB, (TR464)I65.CB) [> -999.000 = 6.500 < 8.500] w=0.693 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I69.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.693 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.691 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I55.CB, (TR464)S68.CB) [> -999.000 = 6.500 < 8.500] w=0.690 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A32.CB, (TR464)A41.CB) [> -999.000 = 6.500 < 8.500] w=0.689 to nn1000 # Constraint # added constraint: bonus constraint((TR464)T56.CB, (TR464)E75.CB) [> -999.000 = 6.500 < 8.500] w=0.689 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L21.CB, (TR464)I65.CB) [> -999.000 = 6.500 < 8.500] w=0.687 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R40.CB, (TR464)L54.CB) [> -999.000 = 6.500 < 8.500] w=0.688 to nn1000 # Constraint # added constraint: bonus constraint((TR464)D42.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.688 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I65.CB, (TR464)I78.CB) [> -999.000 = 6.500 < 8.500] w=0.688 to nn1000 # Constraint # added constraint: bonus constraint((TR464)G36.CA, (TR464)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.686 to nn1000 # Constraint # added constraint: bonus constraint((TR464)D42.CB, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.687 to nn1000 # Constraint # added constraint: bonus constraint((TR464)F63.CB, (TR464)P74.CB) [> -999.000 = 6.500 < 8.500] w=0.686 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L21.CB, (TR464)V62.CB) [> -999.000 = 6.500 < 8.500] w=0.685 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)E52.CB) [> -999.000 = 6.500 < 8.500] w=0.685 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R40.CB, (TR464)I65.CB) [> -999.000 = 6.500 < 8.500] w=0.684 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L29.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.683 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L21.CB, (TR464)E75.CB) [> -999.000 = 6.500 < 8.500] w=0.681 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L26.CB, (TR464)E75.CB) [> -999.000 = 6.500 < 8.500] w=0.681 to nn1000 # Constraint # added constraint: bonus constraint((TR464)N30.CB, (TR464)A53.CB) [> -999.000 = 6.500 < 8.500] w=0.682 to nn1000 # Constraint # added constraint: bonus constraint((TR464)N30.CB, (TR464)V62.CB) [> -999.000 = 6.500 < 8.500] w=0.683 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)I69.CB) [> -999.000 = 6.500 < 8.500] w=0.682 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.683 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.681 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I55.CB, (TR464)D67.CB) [> -999.000 = 6.500 < 8.500] w=0.680 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I33.CB, (TR464)I69.CB) [> -999.000 = 6.500 < 8.500] w=0.678 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R40.CB, (TR464)L50.CB) [> -999.000 = 6.500 < 8.500] w=0.679 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I45.CB, (TR464)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.679 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L20.CB, (TR464)L54.CB) [> -999.000 = 6.500 < 8.500] w=0.676 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)H51.CB) [> -999.000 = 6.500 < 8.500] w=0.677 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)R64.CB) [> -999.000 = 6.500 < 8.500] w=0.676 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R40.CB, (TR464)F63.CB) [> -999.000 = 6.500 < 8.500] w=0.676 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A53.CB, (TR464)P70.CB) [> -999.000 = 6.500 < 8.500] w=0.677 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A53.CB, (TR464)E75.CB) [> -999.000 = 6.500 < 8.500] w=0.677 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L29.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.674 to nn1000 # Constraint # added constraint: bonus constraint((TR464)N30.CB, (TR464)I78.CB) [> -999.000 = 6.500 < 8.500] w=0.675 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I45.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.675 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L21.CB, (TR464)A77.CB) [> -999.000 = 6.500 < 8.500] w=0.673 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A53.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.674 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I45.CB, (TR464)I65.CB) [> -999.000 = 6.500 < 8.500] w=0.672 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L26.CB, (TR464)V62.CB) [> -999.000 = 6.500 < 8.500] w=0.671 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L21.CB, (TR464)D67.CB) [> -999.000 = 6.500 < 8.500] w=0.670 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L26.CB, (TR464)A53.CB) [> -999.000 = 6.500 < 8.500] w=0.670 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L26.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.670 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L26.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.670 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L29.CB, (TR464)F63.CB) [> -999.000 = 6.500 < 8.500] w=0.670 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I45.CB, (TR464)L54.CB) [> -999.000 = 6.500 < 8.500] w=0.670 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)I78.CB) [> -999.000 = 6.500 < 8.500] w=0.670 to nn1000 # Constraint # added constraint: bonus constraint((TR464)E52.CB, (TR464)P70.CB) [> -999.000 = 6.500 < 8.500] w=0.670 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L72.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.671 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L21.CB, (TR464)A53.CB) [> -999.000 = 6.500 < 8.500] w=0.669 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L26.CB, (TR464)I69.CB) [> -999.000 = 6.500 < 8.500] w=0.669 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)A77.CB) [> -999.000 = 6.500 < 8.500] w=0.669 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I55.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.669 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L29.CB, (TR464)Q39.CB) [> -999.000 = 6.500 < 8.500] w=0.666 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.667 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L20.CB, (TR464)R40.CB) [> -999.000 = 6.500 < 8.500] w=0.664 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L29.CB, (TR464)R40.CB) [> -999.000 = 6.500 < 8.500] w=0.665 to nn1000 # Constraint # added constraint: bonus constraint((TR464)N30.CB, (TR464)T56.CB) [> -999.000 = 6.500 < 8.500] w=0.665 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I33.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.665 to nn1000 # Constraint # added constraint: bonus constraint((TR464)D42.CB, (TR464)V62.CB) [> -999.000 = 6.500 < 8.500] w=0.666 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)R59.CB) [> -999.000 = 6.500 < 8.500] w=0.665 to nn1000 # Constraint # added constraint: bonus constraint((TR464)P70.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.665 to nn1000 # Constraint # added constraint: bonus constraint((TR464)H51.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.663 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A32.CB, (TR464)V62.CB) [> -999.000 = 6.500 < 8.500] w=0.659 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)A53.CB) [> -999.000 = 6.500 < 8.500] w=0.660 to nn1000 # Constraint # added constraint: bonus constraint((TR464)E22.CB, (TR464)V38.CB) [> -999.000 = 6.500 < 8.500] w=0.658 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R40.CB, (TR464)H51.CB) [> -999.000 = 6.500 < 8.500] w=0.659 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R40.CB, (TR464)V62.CB) [> -999.000 = 6.500 < 8.500] w=0.659 to nn1000 # Constraint # added constraint: bonus constraint((TR464)T56.CB, (TR464)D67.CB) [> -999.000 = 6.500 < 8.500] w=0.660 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R59.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.658 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V71.CB, (TR464)T80.CB) [> -999.000 = 6.500 < 8.500] w=0.659 to nn1000 # Constraint # added constraint: bonus constraint((TR464)N30.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.657 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I33.CB, (TR464)Q46.CB) [> -999.000 = 6.500 < 8.500] w=0.657 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)A77.CB) [> -999.000 = 6.500 < 8.500] w=0.656 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L54.CB, (TR464)S68.CB) [> -999.000 = 6.500 < 8.500] w=0.656 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L20.CB, (TR464)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.654 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R40.CB, (TR464)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.651 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V62.CB, (TR464)Q82.CB) [> -999.000 = 6.500 < 8.500] w=0.651 to nn1000 # Constraint # added constraint: bonus constraint((TR464)H51.CB, (TR464)V62.CB) [> -999.000 = 6.500 < 8.500] w=0.650 to nn1000 # Constraint # added constraint: bonus constraint((TR464)D67.CB, (TR464)A77.CB) [> -999.000 = 6.500 < 8.500] w=0.651 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I33.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.649 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)E75.CB) [> -999.000 = 6.500 < 8.500] w=0.650 to nn1000 # Constraint # added constraint: bonus constraint((TR464)E52.CB, (TR464)D67.CB) [> -999.000 = 6.500 < 8.500] w=0.649 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I65.CB, (TR464)A77.CB) [> -999.000 = 6.500 < 8.500] w=0.650 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L20.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.646 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L26.CB, (TR464)T56.CB) [> -999.000 = 6.500 < 8.500] w=0.647 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.648 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L21.CB, (TR464)A32.CB) [> -999.000 = 6.500 < 8.500] w=0.646 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)S49.CB) [> -999.000 = 6.500 < 8.500] w=0.646 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.647 to nn1000 # Constraint # added constraint: bonus constraint((TR464)T56.CB, (TR464)A77.CB) [> -999.000 = 6.500 < 8.500] w=0.647 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R40.CB, (TR464)E52.CB) [> -999.000 = 6.500 < 8.500] w=0.645 to nn1000 # Constraint # added constraint: bonus constraint((TR464)H51.CB, (TR464)F63.CB) [> -999.000 = 6.500 < 8.500] w=0.645 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.644 to nn1000 # Constraint # added constraint: bonus constraint((TR464)D42.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.644 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L21.CB, (TR464)Q39.CB) [> -999.000 = 6.500 < 8.500] w=0.643 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I33.CB, (TR464)E75.CB) [> -999.000 = 6.500 < 8.500] w=0.642 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L21.CB, (TR464)F63.CB) [> -999.000 = 6.500 < 8.500] w=0.641 to nn1000 # Constraint # added constraint: bonus constraint((TR464)N30.CB, (TR464)F63.CB) [> -999.000 = 6.500 < 8.500] w=0.641 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I33.CB, (TR464)A77.CB) [> -999.000 = 6.500 < 8.500] w=0.640 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I45.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.640 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V62.CB, (TR464)P74.CB) [> -999.000 = 6.500 < 8.500] w=0.639 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)F63.CB) [> -999.000 = 6.500 < 8.500] w=0.638 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I33.CB, (TR464)I45.CB) [> -999.000 = 6.500 < 8.500] w=0.637 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)V62.CB) [> -999.000 = 6.500 < 8.500] w=0.636 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)I69.CB) [> -999.000 = 6.500 < 8.500] w=0.637 to nn1000 # Constraint # added constraint: bonus constraint((TR464)G36.CA, (TR464)L54.CB) [> -999.000 = 6.500 < 8.500] w=0.635 to nn1000 # Constraint # added constraint: bonus constraint((TR464)D42.CB, (TR464)A53.CB) [> -999.000 = 6.500 < 8.500] w=0.635 to nn1000 # Constraint # added constraint: bonus constraint((TR464)D42.CB, (TR464)I69.CB) [> -999.000 = 6.500 < 8.500] w=0.634 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I45.CB, (TR464)V62.CB) [> -999.000 = 6.500 < 8.500] w=0.634 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)E75.CB) [> -999.000 = 6.500 < 8.500] w=0.635 to nn1000 # Constraint # added constraint: bonus constraint((TR464)E52.CB, (TR464)Q61.CB) [> -999.000 = 6.500 < 8.500] w=0.634 to nn1000 # Constraint # added constraint: bonus constraint((TR464)F63.CB, (TR464)E76.CB) [> -999.000 = 6.500 < 8.500] w=0.635 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L26.CB, (TR464)F63.CB) [> -999.000 = 6.500 < 8.500] w=0.632 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)T56.CB) [> -999.000 = 6.500 < 8.500] w=0.632 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L26.CB, (TR464)D67.CB) [> -999.000 = 6.500 < 8.500] w=0.630 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)E66.CB) [> -999.000 = 6.500 < 8.500] w=0.629 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R40.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.629 to nn1000 # Constraint # added constraint: bonus constraint((TR464)E52.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.629 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R64.CB, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.629 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L20.CB, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.627 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L26.CB, (TR464)Q39.CB) [> -999.000 = 6.500 < 8.500] w=0.627 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L26.CB, (TR464)R40.CB) [> -999.000 = 6.500 < 8.500] w=0.627 to nn1000 # Constraint # added constraint: bonus constraint((TR464)F63.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.628 to nn1000 # Constraint # added constraint: bonus constraint((TR464)N30.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.626 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)I69.CB) [> -999.000 = 6.500 < 8.500] w=0.627 to nn1000 # Constraint # added constraint: bonus constraint((TR464)D42.CB, (TR464)F63.CB) [> -999.000 = 6.500 < 8.500] w=0.626 to nn1000 # Constraint # added constraint: bonus constraint((TR464)D42.CB, (TR464)I65.CB) [> -999.000 = 6.500 < 8.500] w=0.626 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I45.CB, (TR464)R59.CB) [> -999.000 = 6.500 < 8.500] w=0.626 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)R57.CB) [> -999.000 = 6.500 < 8.500] w=0.625 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I45.CB, (TR464)T80.CB) [> -999.000 = 6.500 < 8.500] w=0.625 to nn1000 # Constraint # added constraint: bonus constraint((TR464)K60.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.625 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I65.CB, (TR464)E75.CB) [> -999.000 = 6.500 < 8.500] w=0.626 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)T80.CB) [> -999.000 = 6.500 < 8.500] w=0.624 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.623 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L20.CB, (TR464)I33.CB) [> -999.000 = 6.500 < 8.500] w=0.621 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L29.CB, (TR464)A77.CB) [> -999.000 = 6.500 < 8.500] w=0.621 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A53.CB, (TR464)D67.CB) [> -999.000 = 6.500 < 8.500] w=0.621 to nn1000 # Constraint # added constraint: bonus constraint((TR464)N30.CB, (TR464)E75.CB) [> -999.000 = 6.500 < 8.500] w=0.619 to nn1000 # Constraint # added constraint: bonus constraint((TR464)D42.CB, (TR464)I78.CB) [> -999.000 = 6.500 < 8.500] w=0.620 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I65.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.620 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q48.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.618 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V62.CB, (TR464)T80.CB) [> -999.000 = 6.500 < 8.500] w=0.619 to nn1000 # Constraint # added constraint: bonus constraint((TR464)N30.CB, (TR464)Q46.CB) [> -999.000 = 6.500 < 8.500] w=0.618 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L20.CB, (TR464)L50.CB) [> -999.000 = 6.500 < 8.500] w=0.616 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L29.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.616 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)Q61.CB) [> -999.000 = 6.500 < 8.500] w=0.617 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q48.CB, (TR464)I65.CB) [> -999.000 = 6.500 < 8.500] w=0.617 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)T56.CB) [> -999.000 = 6.500 < 8.500] w=0.616 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R59.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.616 to nn1000 # Constraint # added constraint: bonus constraint((TR464)N30.CB, (TR464)D42.CB) [> -999.000 = 6.500 < 8.500] w=0.614 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)I78.CB) [> -999.000 = 6.500 < 8.500] w=0.615 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L21.CB, (TR464)Q46.CB) [> -999.000 = 6.500 < 8.500] w=0.612 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)P70.CB) [> -999.000 = 6.500 < 8.500] w=0.613 to nn1000 # Constraint # added constraint: bonus constraint((TR464)D42.CB, (TR464)E75.CB) [> -999.000 = 6.500 < 8.500] w=0.613 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A53.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.614 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L29.CB, (TR464)T56.CB) [> -999.000 = 6.500 < 8.500] w=0.612 to nn1000 # Constraint # added constraint: bonus constraint((TR464)D42.CB, (TR464)A77.CB) [> -999.000 = 6.500 < 8.500] w=0.610 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I69.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.610 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L29.CB, (TR464)I45.CB) [> -999.000 = 6.500 < 8.500] w=0.608 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A32.CB, (TR464)I45.CB) [> -999.000 = 6.500 < 8.500] w=0.608 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A32.CB, (TR464)L54.CB) [> -999.000 = 6.500 < 8.500] w=0.607 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A32.CB, (TR464)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.606 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A32.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.607 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I33.CB, (TR464)D67.CB) [> -999.000 = 6.500 < 8.500] w=0.608 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A34.CB, (TR464)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.607 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R59.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.607 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L20.CB, (TR464)I65.CB) [> -999.000 = 6.500 < 8.500] w=0.604 to nn1000 # Constraint # added constraint: bonus constraint((TR464)G36.CA, (TR464)T56.CB) [> -999.000 = 6.500 < 8.500] w=0.605 to nn1000 # Constraint # added constraint: bonus constraint((TR464)T37.CB, (TR464)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.605 to nn1000 # Constraint # added constraint: bonus constraint((TR464)T37.CB, (TR464)R57.CB) [> -999.000 = 6.500 < 8.500] w=0.606 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I45.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.606 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L54.CB, (TR464)E66.CB) [> -999.000 = 6.500 < 8.500] w=0.604 to nn1000 # Constraint # added constraint: bonus constraint((TR464)S23.CB, (TR464)T37.CB) [> -999.000 = 6.500 < 8.500] w=0.601 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)D67.CB) [> -999.000 = 6.500 < 8.500] w=0.601 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)Q48.CB) [> -999.000 = 6.500 < 8.500] w=0.601 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)T56.CB) [> -999.000 = 6.500 < 8.500] w=0.602 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I45.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.602 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)T80.CB) [> -999.000 = 6.500 < 8.500] w=0.599 to nn1000 # Constraint # added constraint: bonus constraint((TR464)T56.CB, (TR464)S68.CB) [> -999.000 = 6.500 < 8.500] w=0.600 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V71.CB, (TR464)A84.CB) [> -999.000 = 6.500 < 8.500] w=0.600 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L20.CB, (TR464)A77.CB) [> -999.000 = 6.500 < 8.500] w=0.599 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L26.CB, (TR464)A77.CB) [> -999.000 = 6.500 < 8.500] w=0.597 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R40.CB, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.597 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A53.CB, (TR464)S68.CB) [> -999.000 = 6.500 < 8.500] w=0.598 to nn1000 # Constraint # added constraint: bonus constraint((TR464)G36.CA, (TR464)I65.CB) [> -999.000 = 6.500 < 8.500] w=0.595 to nn1000 # Constraint # added constraint: bonus constraint((TR464)H51.CB, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.595 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L26.CB, (TR464)D42.CB) [> -999.000 = 6.500 < 8.500] w=0.594 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L29.CB, (TR464)I69.CB) [> -999.000 = 6.500 < 8.500] w=0.594 to nn1000 # Constraint # added constraint: bonus constraint((TR464)S23.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.592 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R59.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.592 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V62.CB, (TR464)A84.CB) [> -999.000 = 6.500 < 8.500] w=0.592 to nn1000 # Constraint # added constraint: bonus constraint((TR464)S68.CB, (TR464)A77.CB) [> -999.000 = 6.500 < 8.500] w=0.593 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L26.CB, (TR464)P70.CB) [> -999.000 = 6.500 < 8.500] w=0.591 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)D67.CB) [> -999.000 = 6.500 < 8.500] w=0.592 to nn1000 # Constraint # added constraint: bonus constraint((TR464)S23.CB, (TR464)I45.CB) [> -999.000 = 6.500 < 8.500] w=0.589 to nn1000 # Constraint # added constraint: bonus constraint((TR464)D42.CB, (TR464)D67.CB) [> -999.000 = 6.500 < 8.500] w=0.590 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)R64.CB) [> -999.000 = 6.500 < 8.500] w=0.589 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I55.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.590 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I55.CB, (TR464)E66.CB) [> -999.000 = 6.500 < 8.500] w=0.589 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L21.CB, (TR464)P70.CB) [> -999.000 = 6.500 < 8.500] w=0.587 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)R57.CB) [> -999.000 = 6.500 < 8.500] w=0.586 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q61.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.587 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L20.CB, (TR464)E52.CB) [> -999.000 = 6.500 < 8.500] w=0.585 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L21.CB, (TR464)I45.CB) [> -999.000 = 6.500 < 8.500] w=0.584 to nn1000 # Constraint # added constraint: bonus constraint((TR464)D42.CB, (TR464)P70.CB) [> -999.000 = 6.500 < 8.500] w=0.585 to nn1000 # Constraint # added constraint: bonus constraint((TR464)N47.CB, (TR464)I65.CB) [> -999.000 = 6.500 < 8.500] w=0.585 to nn1000 # Constraint # added constraint: bonus constraint((TR464)N30.CB, (TR464)A77.CB) [> -999.000 = 6.500 < 8.500] w=0.583 to nn1000 # Constraint # added constraint: bonus constraint((TR464)S35.CB, (TR464)I45.CB) [> -999.000 = 6.500 < 8.500] w=0.583 to nn1000 # Constraint # added constraint: bonus constraint((TR464)E52.CB, (TR464)S68.CB) [> -999.000 = 6.500 < 8.500] w=0.584 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L54.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.582 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R59.CB, (TR464)T80.CB) [> -999.000 = 6.500 < 8.500] w=0.583 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L20.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.581 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A34.CB, (TR464)L54.CB) [> -999.000 = 6.500 < 8.500] w=0.581 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)R64.CB) [> -999.000 = 6.500 < 8.500] w=0.582 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.579 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L21.CB, (TR464)G36.CA) [> -999.000 = 6.500 < 8.500] w=0.577 to nn1000 # Constraint # added constraint: bonus constraint((TR464)S23.CB, (TR464)A41.CB) [> -999.000 = 6.500 < 8.500] w=0.576 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A28.CB, (TR464)V38.CB) [> -999.000 = 6.500 < 8.500] w=0.576 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q48.CB, (TR464)V62.CB) [> -999.000 = 6.500 < 8.500] w=0.576 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L29.CB, (TR464)D42.CB) [> -999.000 = 6.500 < 8.500] w=0.574 to nn1000 # Constraint # added constraint: bonus constraint((TR464)K31.CB, (TR464)A41.CB) [> -999.000 = 6.500 < 8.500] w=0.574 to nn1000 # Constraint # added constraint: bonus constraint((TR464)S23.CB, (TR464)A32.CB) [> -999.000 = 6.500 < 8.500] w=0.573 to nn1000 # Constraint # added constraint: bonus constraint((TR464)N30.CB, (TR464)I69.CB) [> -999.000 = 6.500 < 8.500] w=0.573 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L26.CB, (TR464)Q46.CB) [> -999.000 = 6.500 < 8.500] w=0.572 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L29.CB, (TR464)E75.CB) [> -999.000 = 6.500 < 8.500] w=0.571 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I33.CB, (TR464)P70.CB) [> -999.000 = 6.500 < 8.500] w=0.571 to nn1000 # Constraint # added constraint: bonus constraint((TR464)T37.CB, (TR464)R59.CB) [> -999.000 = 6.500 < 8.500] w=0.571 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)A84.CB) [> -999.000 = 6.500 < 8.500] w=0.572 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L54.CB, (TR464)P74.CB) [> -999.000 = 6.500 < 8.500] w=0.573 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R59.CB, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.571 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L20.CB, (TR464)I78.CB) [> -999.000 = 6.500 < 8.500] w=0.568 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)H51.CB) [> -999.000 = 6.500 < 8.500] w=0.568 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)A77.CB) [> -999.000 = 6.500 < 8.500] w=0.569 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)P70.CB) [> -999.000 = 6.500 < 8.500] w=0.569 to nn1000 # Constraint # added constraint: bonus constraint((TR464)D42.CB, (TR464)T56.CB) [> -999.000 = 6.500 < 8.500] w=0.568 to nn1000 # Constraint # added constraint: bonus constraint((TR464)P74.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.569 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I45.CB, (TR464)T56.CB) [> -999.000 = 6.500 < 8.500] w=0.568 to nn1000 # Constraint # added constraint: bonus constraint((TR464)H51.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.567 to nn1000 # Constraint # added constraint: bonus constraint((TR464)K60.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.567 to nn1000 # Constraint # added constraint: bonus constraint((TR464)K60.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.566 to nn1000 # Constraint # added constraint: bonus constraint((TR464)T37.CB, (TR464)N47.CB) [> -999.000 = 6.500 < 8.500] w=0.565 to nn1000 # Constraint # added constraint: bonus constraint((TR464)D58.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.565 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L73.CB, (TR464)Q82.CB) [> -999.000 = 6.500 < 8.500] w=0.566 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L21.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.563 to nn1000 # Constraint # added constraint: bonus constraint((TR464)E27.CB, (TR464)A41.CB) [> -999.000 = 6.500 < 8.500] w=0.564 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A28.CB, (TR464)A41.CB) [> -999.000 = 6.500 < 8.500] w=0.563 to nn1000 # Constraint # added constraint: bonus constraint((TR464)P70.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.564 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L20.CB, (TR464)A32.CB) [> -999.000 = 6.500 < 8.500] w=0.562 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L20.CB, (TR464)V62.CB) [> -999.000 = 6.500 < 8.500] w=0.562 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A32.CB, (TR464)A77.CB) [> -999.000 = 6.500 < 8.500] w=0.562 to nn1000 # Constraint # added constraint: bonus constraint((TR464)T37.CB, (TR464)Q48.CB) [> -999.000 = 6.500 < 8.500] w=0.562 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L20.CB, (TR464)Q39.CB) [> -999.000 = 6.500 < 8.500] w=0.561 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A28.CB, (TR464)L54.CB) [> -999.000 = 6.500 < 8.500] w=0.561 to nn1000 # Constraint # added constraint: bonus constraint((TR464)N47.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.562 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V71.CB, (TR464)Q82.CB) [> -999.000 = 6.500 < 8.500] w=0.562 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A34.CB, (TR464)L50.CB) [> -999.000 = 6.500 < 8.500] w=0.560 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R40.CB, (TR464)R57.CB) [> -999.000 = 6.500 < 8.500] w=0.561 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)E75.CB) [> -999.000 = 6.500 < 8.500] w=0.560 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)P70.CB) [> -999.000 = 6.500 < 8.500] w=0.561 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I45.CB, (TR464)F63.CB) [> -999.000 = 6.500 < 8.500] w=0.559 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I65.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.560 to nn1000 # Constraint # added constraint: bonus constraint((TR464)E27.CB, (TR464)V38.CB) [> -999.000 = 6.500 < 8.500] w=0.558 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)R59.CB) [> -999.000 = 6.500 < 8.500] w=0.558 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I55.CB, (TR464)P74.CB) [> -999.000 = 6.500 < 8.500] w=0.558 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L20.CB, (TR464)F63.CB) [> -999.000 = 6.500 < 8.500] w=0.557 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A32.CB, (TR464)I65.CB) [> -999.000 = 6.500 < 8.500] w=0.556 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L20.CB, (TR464)N30.CB) [> -999.000 = 6.500 < 8.500] w=0.555 to nn1000 # Constraint # added constraint: bonus constraint((TR464)N30.CB, (TR464)D67.CB) [> -999.000 = 6.500 < 8.500] w=0.554 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)S49.CB) [> -999.000 = 6.500 < 8.500] w=0.554 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)R64.CB) [> -999.000 = 6.500 < 8.500] w=0.554 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R40.CB, (TR464)I69.CB) [> -999.000 = 6.500 < 8.500] w=0.554 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I45.CB, (TR464)R57.CB) [> -999.000 = 6.500 < 8.500] w=0.555 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L54.CB, (TR464)E76.CB) [> -999.000 = 6.500 < 8.500] w=0.554 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I55.CB, (TR464)E76.CB) [> -999.000 = 6.500 < 8.500] w=0.554 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I69.CB, (TR464)T80.CB) [> -999.000 = 6.500 < 8.500] w=0.555 to nn1000 # Constraint # added constraint: bonus constraint((TR464)S23.CB, (TR464)V38.CB) [> -999.000 = 6.500 < 8.500] w=0.553 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A28.CB, (TR464)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.553 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)S68.CB) [> -999.000 = 6.500 < 8.500] w=0.551 to nn1000 # Constraint # added constraint: bonus constraint((TR464)S68.CB, (TR464)I78.CB) [> -999.000 = 6.500 < 8.500] w=0.551 to nn1000 # Constraint # added constraint: bonus constraint((TR464)N30.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.549 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.550 to nn1000 # Constraint # added constraint: bonus constraint((TR464)D42.CB, (TR464)H51.CB) [> -999.000 = 6.500 < 8.500] w=0.549 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I45.CB, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.548 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A53.CB, (TR464)P74.CB) [> -999.000 = 6.500 < 8.500] w=0.548 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L20.CB, (TR464)I45.CB) [> -999.000 = 6.500 < 8.500] w=0.547 to nn1000 # Constraint # added constraint: bonus constraint((TR464)S23.CB, (TR464)S35.CB) [> -999.000 = 6.500 < 8.500] w=0.544 to nn1000 # Constraint # added constraint: bonus constraint((TR464)G25.CA, (TR464)A41.CB) [> -999.000 = 6.500 < 8.500] w=0.545 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R40.CB, (TR464)Q61.CB) [> -999.000 = 6.500 < 8.500] w=0.545 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L72.CB, (TR464)Q82.CB) [> -999.000 = 6.500 < 8.500] w=0.546 to nn1000 # Constraint # added constraint: bonus constraint((TR464)S23.CB, (TR464)T80.CB) [> -999.000 = 6.500 < 8.500] w=0.542 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I33.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.543 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.544 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V62.CB, (TR464)A79.CB) [> -999.000 = 6.500 < 8.500] w=0.544 to nn1000 # Constraint # added constraint: bonus constraint((TR464)D42.CB, (TR464)Q61.CB) [> -999.000 = 6.500 < 8.500] w=0.542 to nn1000 # Constraint # added constraint: bonus constraint((TR464)E52.CB, (TR464)P74.CB) [> -999.000 = 6.500 < 8.500] w=0.542 to nn1000 # Constraint # added constraint: bonus constraint((TR464)E52.CB, (TR464)E76.CB) [> -999.000 = 6.500 < 8.500] w=0.543 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A53.CB, (TR464)T80.CB) [> -999.000 = 6.500 < 8.500] w=0.542 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L26.CB, (TR464)I45.CB) [> -999.000 = 6.500 < 8.500] w=0.540 to nn1000 # Constraint # added constraint: bonus constraint((TR464)H51.CB, (TR464)R64.CB) [> -999.000 = 6.500 < 8.500] w=0.540 to nn1000 # Constraint # added constraint: bonus constraint((TR464)F63.CB, (TR464)A84.CB) [> -999.000 = 6.500 < 8.500] w=0.540 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A32.CB, (TR464)L50.CB) [> -999.000 = 6.500 < 8.500] w=0.539 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I33.CB, (TR464)R64.CB) [> -999.000 = 6.500 < 8.500] w=0.537 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)Q61.CB) [> -999.000 = 6.500 < 8.500] w=0.538 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I45.CB, (TR464)A77.CB) [> -999.000 = 6.500 < 8.500] w=0.538 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R57.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.538 to nn1000 # Constraint # added constraint: bonus constraint((TR464)K60.CB, (TR464)T80.CB) [> -999.000 = 6.500 < 8.500] w=0.538 to nn1000 # Constraint # added constraint: bonus constraint((TR464)F63.CB, (TR464)T80.CB) [> -999.000 = 6.500 < 8.500] w=0.538 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A32.CB, (TR464)T80.CB) [> -999.000 = 6.500 < 8.500] w=0.534 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A34.CB, (TR464)I65.CB) [> -999.000 = 6.500 < 8.500] w=0.535 to nn1000 # Constraint # added constraint: bonus constraint((TR464)S35.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.536 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I65.CB, (TR464)E76.CB) [> -999.000 = 6.500 < 8.500] w=0.537 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R40.CB, (TR464)S49.CB) [> -999.000 = 6.500 < 8.500] w=0.535 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L26.CB, (TR464)G36.CA) [> -999.000 = 6.500 < 8.500] w=0.531 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)I69.CB) [> -999.000 = 6.500 < 8.500] w=0.532 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L20.CB, (TR464)Q46.CB) [> -999.000 = 6.500 < 8.500] w=0.530 to nn1000 # Constraint # added constraint: bonus constraint((TR464)T37.CB, (TR464)T56.CB) [> -999.000 = 6.500 < 8.500] w=0.531 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A32.CB, (TR464)E52.CB) [> -999.000 = 6.500 < 8.500] w=0.530 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R40.CB, (TR464)R64.CB) [> -999.000 = 6.500 < 8.500] w=0.531 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q61.CB, (TR464)P74.CB) [> -999.000 = 6.500 < 8.500] w=0.532 to nn1000 # Constraint # added constraint: bonus constraint((TR464)T37.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.530 to nn1000 # Constraint # added constraint: bonus constraint((TR464)N47.CB, (TR464)R59.CB) [> -999.000 = 6.500 < 8.500] w=0.530 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L20.CB, (TR464)H51.CB) [> -999.000 = 6.500 < 8.500] w=0.529 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L20.CB, (TR464)I69.CB) [> -999.000 = 6.500 < 8.500] w=0.529 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I69.CB, (TR464)A84.CB) [> -999.000 = 6.500 < 8.500] w=0.529 to nn1000 # Constraint # added constraint: bonus constraint((TR464)T37.CB, (TR464)V62.CB) [> -999.000 = 6.500 < 8.500] w=0.526 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)I69.CB) [> -999.000 = 6.500 < 8.500] w=0.526 to nn1000 # Constraint # added constraint: bonus constraint((TR464)N47.CB, (TR464)V62.CB) [> -999.000 = 6.500 < 8.500] w=0.527 to nn1000 # Constraint # added constraint: bonus constraint((TR464)G43.CA, (TR464)V62.CB) [> -999.000 = 6.500 < 8.500] w=0.526 to nn1000 # Constraint # added constraint: bonus constraint((TR464)N47.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.527 to nn1000 # Constraint # added constraint: bonus constraint((TR464)G36.CA, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.525 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R40.CB, (TR464)A77.CB) [> -999.000 = 6.500 < 8.500] w=0.524 to nn1000 # Constraint # added constraint: bonus constraint((TR464)T37.CB, (TR464)L54.CB) [> -999.000 = 6.500 < 8.500] w=0.523 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L20.CB, (TR464)E75.CB) [> -999.000 = 6.500 < 8.500] w=0.521 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)Q61.CB) [> -999.000 = 6.500 < 8.500] w=0.522 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R40.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.522 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)A77.CB) [> -999.000 = 6.500 < 8.500] w=0.521 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)D58.CB) [> -999.000 = 6.500 < 8.500] w=0.519 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q61.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.520 to nn1000 # Constraint # added constraint: bonus constraint((TR464)E52.CB, (TR464)E66.CB) [> -999.000 = 6.500 < 8.500] w=0.519 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R59.CB, (TR464)A77.CB) [> -999.000 = 6.500 < 8.500] w=0.519 to nn1000 # Constraint # added constraint: bonus constraint((TR464)T37.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.518 to nn1000 # Constraint # added constraint: bonus constraint((TR464)E22.CB, (TR464)A41.CB) [> -999.000 = 6.500 < 8.500] w=0.517 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A32.CB, (TR464)A53.CB) [> -999.000 = 6.500 < 8.500] w=0.517 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I33.CB, (TR464)Q48.CB) [> -999.000 = 6.500 < 8.500] w=0.518 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)Q82.CB) [> -999.000 = 6.500 < 8.500] w=0.518 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)I78.CB) [> -999.000 = 6.500 < 8.500] w=0.518 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R40.CB, (TR464)R59.CB) [> -999.000 = 6.500 < 8.500] w=0.518 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A32.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.516 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A34.CB, (TR464)I45.CB) [> -999.000 = 6.500 < 8.500] w=0.515 to nn1000 # Constraint # added constraint: bonus constraint((TR464)S35.CB, (TR464)T80.CB) [> -999.000 = 6.500 < 8.500] w=0.515 to nn1000 # Constraint # added constraint: bonus constraint((TR464)T37.CB, (TR464)Q46.CB) [> -999.000 = 6.500 < 8.500] w=0.516 to nn1000 # Constraint # added constraint: bonus constraint((TR464)F63.CB, (TR464)Q82.CB) [> -999.000 = 6.500 < 8.500] w=0.517 to nn1000 # Constraint # added constraint: bonus constraint((TR464)T37.CB, (TR464)L50.CB) [> -999.000 = 6.500 < 8.500] w=0.516 to nn1000 # Constraint # added constraint: bonus constraint((TR464)D42.CB, (TR464)S68.CB) [> -999.000 = 6.500 < 8.500] w=0.516 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A28.CB, (TR464)I65.CB) [> -999.000 = 6.500 < 8.500] w=0.514 to nn1000 # Constraint # added constraint: bonus constraint((TR464)G36.CA, (TR464)I78.CB) [> -999.000 = 6.500 < 8.500] w=0.514 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I33.CB, (TR464)H51.CB) [> -999.000 = 6.500 < 8.500] w=0.513 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)D58.CB) [> -999.000 = 6.500 < 8.500] w=0.513 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)E75.CB) [> -999.000 = 6.500 < 8.500] w=0.514 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q48.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.513 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A32.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.512 to nn1000 # Constraint # added constraint: bonus constraint((TR464)N47.CB, (TR464)F63.CB) [> -999.000 = 6.500 < 8.500] w=0.511 to nn1000 # Constraint # added constraint: bonus constraint((TR464)S49.CB, (TR464)I65.CB) [> -999.000 = 6.500 < 8.500] w=0.512 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R57.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.512 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I55.CB, (TR464)T80.CB) [> -999.000 = 6.500 < 8.500] w=0.509 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q61.CB, (TR464)P70.CB) [> -999.000 = 6.500 < 8.500] w=0.510 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I69.CB, (TR464)Q82.CB) [> -999.000 = 6.500 < 8.500] w=0.511 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L20.CB, (TR464)T56.CB) [> -999.000 = 6.500 < 8.500] w=0.508 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L20.CB, (TR464)E66.CB) [> -999.000 = 6.500 < 8.500] w=0.509 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L26.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.508 to nn1000 # Constraint # added constraint: bonus constraint((TR464)K31.CB, (TR464)I45.CB) [> -999.000 = 6.500 < 8.500] w=0.508 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I33.CB, (TR464)N47.CB) [> -999.000 = 6.500 < 8.500] w=0.509 to nn1000 # Constraint # added constraint: bonus constraint((TR464)T37.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.509 to nn1000 # Constraint # added constraint: bonus constraint((TR464)G43.CA, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.510 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L29.CB, (TR464)P70.CB) [> -999.000 = 6.500 < 8.500] w=0.507 to nn1000 # Constraint # added constraint: bonus constraint((TR464)T37.CB, (TR464)F63.CB) [> -999.000 = 6.500 < 8.500] w=0.508 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I45.CB, (TR464)A84.CB) [> -999.000 = 6.500 < 8.500] w=0.508 to nn1000 # Constraint # added constraint: bonus constraint((TR464)H51.CB, (TR464)A77.CB) [> -999.000 = 6.500 < 8.500] w=0.508 to nn1000 # Constraint # added constraint: bonus constraint((TR464)P70.CB, (TR464)T80.CB) [> -999.000 = 6.500 < 8.500] w=0.509 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I65.CB, (TR464)P74.CB) [> -999.000 = 6.500 < 8.500] w=0.507 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L73.CB, (TR464)A84.CB) [> -999.000 = 6.500 < 8.500] w=0.508 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L29.CB, (TR464)Q82.CB) [> -999.000 = 6.500 < 8.500] w=0.506 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L29.CB, (TR464)Q46.CB) [> -999.000 = 6.500 < 8.500] w=0.505 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R40.CB, (TR464)T56.CB) [> -999.000 = 6.500 < 8.500] w=0.505 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R40.CB, (TR464)P70.CB) [> -999.000 = 6.500 < 8.500] w=0.505 to nn1000 # Constraint # added constraint: bonus constraint((TR464)S68.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.505 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L29.CB, (TR464)D67.CB) [> -999.000 = 6.500 < 8.500] w=0.503 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A53.CB, (TR464)A84.CB) [> -999.000 = 6.500 < 8.500] w=0.503 to nn1000 # Constraint # added constraint: bonus constraint((TR464)E75.CB, (TR464)A84.CB) [> -999.000 = 6.500 < 8.500] w=0.503 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L29.CB, (TR464)T80.CB) [> -999.000 = 6.500 < 8.500] w=0.502 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)R57.CB) [> -999.000 = 6.500 < 8.500] w=0.500 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R40.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.501 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L20.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.498 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L21.CB, (TR464)H51.CB) [> -999.000 = 6.500 < 8.500] w=0.499 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)D58.CB) [> -999.000 = 6.500 < 8.500] w=0.499 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R40.CB, (TR464)S68.CB) [> -999.000 = 6.500 < 8.500] w=0.499 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R40.CB, (TR464)I78.CB) [> -999.000 = 6.500 < 8.500] w=0.500 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L54.CB, (TR464)T80.CB) [> -999.000 = 6.500 < 8.500] w=0.501 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R57.CB, (TR464)E66.CB) [> -999.000 = 6.500 < 8.500] w=0.501 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)S68.CB) [> -999.000 = 6.500 < 8.500] w=0.499 to nn1000 # Constraint # added constraint: bonus constraint((TR464)N47.CB, (TR464)A84.CB) [> -999.000 = 6.500 < 8.500] w=0.498 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)I78.CB) [> -999.000 = 6.500 < 8.500] w=0.497 to nn1000 # Constraint # added constraint: bonus constraint((TR464)S49.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.498 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A53.CB, (TR464)E76.CB) [> -999.000 = 6.500 < 8.500] w=0.498 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L54.CB, (TR464)A84.CB) [> -999.000 = 6.500 < 8.500] w=0.498 to nn1000 # Constraint # added constraint: bonus constraint((TR464)S23.CB, (TR464)R59.CB) [> -999.000 = 6.500 < 8.500] w=0.495 to nn1000 # Constraint # added constraint: bonus constraint((TR464)T37.CB, (TR464)S49.CB) [> -999.000 = 6.500 < 8.500] w=0.495 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L20.CB, (TR464)D42.CB) [> -999.000 = 6.500 < 8.500] w=0.494 to nn1000 # Constraint # added constraint: bonus constraint((TR464)G36.CA, (TR464)D67.CB) [> -999.000 = 6.500 < 8.500] w=0.494 to nn1000 # Constraint # added constraint: bonus constraint((TR464)H51.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.495 to nn1000 # Constraint # added constraint: bonus constraint((TR464)G43.CA, (TR464)R59.CB) [> -999.000 = 6.500 < 8.500] w=0.493 to nn1000 # Constraint # added constraint: bonus constraint((TR464)K60.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.494 to nn1000 # Constraint # added constraint: bonus constraint((TR464)S23.CB, (TR464)R40.CB) [> -999.000 = 6.500 < 8.500] w=0.492 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)D67.CB) [> -999.000 = 6.500 < 8.500] w=0.492 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q48.CB, (TR464)R59.CB) [> -999.000 = 6.500 < 8.500] w=0.492 to nn1000 # Constraint # added constraint: bonus constraint((TR464)H51.CB, (TR464)I69.CB) [> -999.000 = 6.500 < 8.500] w=0.492 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L54.CB, (TR464)Q82.CB) [> -999.000 = 6.500 < 8.500] w=0.492 to nn1000 # Constraint # added constraint: bonus constraint((TR464)T56.CB, (TR464)E66.CB) [> -999.000 = 6.500 < 8.500] w=0.493 to nn1000 # Constraint # added constraint: bonus constraint((TR464)N47.CB, (TR464)T56.CB) [> -999.000 = 6.500 < 8.500] w=0.490 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L72.CB, (TR464)A84.CB) [> -999.000 = 6.500 < 8.500] w=0.491 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)P70.CB) [> -999.000 = 6.500 < 8.500] w=0.490 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R40.CB, (TR464)E75.CB) [> -999.000 = 6.500 < 8.500] w=0.490 to nn1000 # Constraint # added constraint: bonus constraint((TR464)S49.CB, (TR464)V62.CB) [> -999.000 = 6.500 < 8.500] w=0.490 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)Q61.CB) [> -999.000 = 6.500 < 8.500] w=0.490 to nn1000 # Constraint # added constraint: bonus constraint((TR464)P70.CB, (TR464)A84.CB) [> -999.000 = 6.500 < 8.500] w=0.490 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)E75.CB) [> -999.000 = 6.500 < 8.500] w=0.488 to nn1000 # Constraint # added constraint: bonus constraint((TR464)H51.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.489 to nn1000 # Constraint # added constraint: bonus constraint((TR464)G43.CA, (TR464)I65.CB) [> -999.000 = 6.500 < 8.500] w=0.488 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q61.CB, (TR464)E75.CB) [> -999.000 = 6.500 < 8.500] w=0.488 to nn1000 # Constraint # added constraint: bonus constraint((TR464)D67.CB, (TR464)E76.CB) [> -999.000 = 6.500 < 8.500] w=0.489 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.487 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A28.CB, (TR464)L50.CB) [> -999.000 = 6.500 < 8.500] w=0.486 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)D67.CB) [> -999.000 = 6.500 < 8.500] w=0.486 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I65.CB, (TR464)T80.CB) [> -999.000 = 6.500 < 8.500] w=0.487 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L21.CB, (TR464)S68.CB) [> -999.000 = 6.500 < 8.500] w=0.484 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A34.CB, (TR464)T56.CB) [> -999.000 = 6.500 < 8.500] w=0.485 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)S68.CB) [> -999.000 = 6.500 < 8.500] w=0.485 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)Q61.CB) [> -999.000 = 6.500 < 8.500] w=0.484 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)S68.CB) [> -999.000 = 6.500 < 8.500] w=0.484 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q48.CB, (TR464)F63.CB) [> -999.000 = 6.500 < 8.500] w=0.485 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L21.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.483 to nn1000 # Constraint # added constraint: bonus constraint((TR464)N30.CB, (TR464)P70.CB) [> -999.000 = 6.500 < 8.500] w=0.484 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q61.CB, (TR464)A77.CB) [> -999.000 = 6.500 < 8.500] w=0.484 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A32.CB, (TR464)I78.CB) [> -999.000 = 6.500 < 8.500] w=0.483 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)R64.CB) [> -999.000 = 6.500 < 8.500] w=0.483 to nn1000 # Constraint # added constraint: bonus constraint((TR464)D67.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.483 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L26.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.482 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A34.CB, (TR464)E52.CB) [> -999.000 = 6.500 < 8.500] w=0.482 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)K60.CB) [> -999.000 = 6.500 < 8.500] w=0.482 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)E76.CB) [> -999.000 = 6.500 < 8.500] w=0.481 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A28.CB, (TR464)E52.CB) [> -999.000 = 6.500 < 8.500] w=0.479 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L20.CB, (TR464)D67.CB) [> -999.000 = 6.500 < 8.500] w=0.476 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L20.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.475 to nn1000 # Constraint # added constraint: bonus constraint((TR464)G36.CA, (TR464)E75.CB) [> -999.000 = 6.500 < 8.500] w=0.476 to nn1000 # Constraint # added constraint: bonus constraint((TR464)T37.CB, (TR464)A53.CB) [> -999.000 = 6.500 < 8.500] w=0.477 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)S68.CB) [> -999.000 = 6.500 < 8.500] w=0.478 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)P74.CB) [> -999.000 = 6.500 < 8.500] w=0.478 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)R57.CB) [> -999.000 = 6.500 < 8.500] w=0.478 to nn1000 # Constraint # added constraint: bonus constraint((TR464)D42.CB, (TR464)R64.CB) [> -999.000 = 6.500 < 8.500] w=0.476 to nn1000 # Constraint # added constraint: bonus constraint((TR464)S44.CB, (TR464)I55.CB) [> -999.000 = 6.500 < 8.500] w=0.475 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)R59.CB) [> -999.000 = 6.500 < 8.500] w=0.476 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A53.CB, (TR464)Q82.CB) [> -999.000 = 6.500 < 8.500] w=0.477 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R57.CB, (TR464)I69.CB) [> -999.000 = 6.500 < 8.500] w=0.477 to nn1000 # Constraint # added constraint: bonus constraint((TR464)E27.CB, (TR464)V71.CB) [> -999.000 = 6.500 < 8.500] w=0.475 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)E66.CB) [> -999.000 = 6.500 < 8.500] w=0.474 to nn1000 # Constraint # added constraint: bonus constraint((TR464)D42.CB, (TR464)D58.CB) [> -999.000 = 6.500 < 8.500] w=0.474 to nn1000 # Constraint # added constraint: bonus constraint((TR464)H51.CB, (TR464)I78.CB) [> -999.000 = 6.500 < 8.500] w=0.475 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R59.CB, (TR464)A84.CB) [> -999.000 = 6.500 < 8.500] w=0.476 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L29.CB, (TR464)Q48.CB) [> -999.000 = 6.500 < 8.500] w=0.474 to nn1000 # Constraint # added constraint: bonus constraint((TR464)T37.CB, (TR464)R64.CB) [> -999.000 = 6.500 < 8.500] w=0.474 to nn1000 # Constraint # added constraint: bonus constraint((TR464)V38.CB, (TR464)K60.CB) [> -999.000 = 6.500 < 8.500] w=0.474 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R40.CB, (TR464)E66.CB) [> -999.000 = 6.500 < 8.500] w=0.474 to nn1000 # Constraint # added constraint: bonus constraint((TR464)G43.CA, (TR464)L54.CB) [> -999.000 = 6.500 < 8.500] w=0.474 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)R59.CB) [> -999.000 = 6.500 < 8.500] w=0.474 to nn1000 # Constraint # added constraint: bonus constraint((TR464)T56.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.474 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A32.CB, (TR464)R59.CB) [> -999.000 = 6.500 < 8.500] w=0.471 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A32.CB, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.471 to nn1000 # Constraint # added constraint: bonus constraint((TR464)H51.CB, (TR464)Q61.CB) [> -999.000 = 6.500 < 8.500] w=0.471 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R59.CB, (TR464)S68.CB) [> -999.000 = 6.500 < 8.500] w=0.471 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R59.CB, (TR464)I69.CB) [> -999.000 = 6.500 < 8.500] w=0.472 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q61.CB, (TR464)I78.CB) [> -999.000 = 6.500 < 8.500] w=0.470 to nn1000 # Constraint # added constraint: bonus constraint((TR464)P70.CB, (TR464)Q82.CB) [> -999.000 = 6.500 < 8.500] w=0.471 to nn1000 # Constraint # added constraint: bonus constraint((TR464)E22.CB, (TR464)I45.CB) [> -999.000 = 6.500 < 8.500] w=0.468 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A32.CB, (TR464)L73.CB) [> -999.000 = 6.500 < 8.500] w=0.469 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A34.CB, (TR464)V62.CB) [> -999.000 = 6.500 < 8.500] w=0.470 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)R59.CB) [> -999.000 = 6.500 < 8.500] w=0.467 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L29.CB, (TR464)H51.CB) [> -999.000 = 6.500 < 8.500] w=0.466 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I33.CB, (TR464)S68.CB) [> -999.000 = 6.500 < 8.500] w=0.466 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q39.CB, (TR464)D67.CB) [> -999.000 = 6.500 < 8.500] w=0.466 to nn1000 # Constraint # added constraint: bonus constraint((TR464)L50.CB, (TR464)I81.CB) [> -999.000 = 6.500 < 8.500] w=0.467 to nn1000 # Constraint # added constraint: bonus constraint((TR464)I69.CB, (TR464)A79.CB) [> -999.000 = 6.500 < 8.500] w=0.467 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R40.CB, (TR464)T80.CB) [> -999.000 = 6.500 < 8.500] w=0.466 to nn1000 # Constraint # added constraint: bonus constraint((TR464)A41.CB, (TR464)D58.CB) [> -999.000 = 6.500 < 8.500] w=0.466 to nn1000 # Constraint # added constraint: bonus constraint((TR464)S23.CB, (TR464)I83.CB) [> -999.000 = 6.500 < 8.500] w=0.464 to nn1000 # Constraint # added constraint: bonus constraint((TR464)S44.CB, (TR464)L54.CB) [> -999.000 = 6.500 < 8.500] w=0.465 to nn1000 # Constraint # added constraint: bonus constraint((TR464)E22.CB, (TR464)A32.CB) [> -999.000 = 6.500 < 8.500] w=0.463 to nn1000 # Constraint # added constraint: bonus constraint((TR464)G43.CA, (TR464)L72.CB) [> -999.000 = 6.500 < 8.500] w=0.463 to nn1000 # Constraint # added constraint: bonus constraint((TR464)Q46.CB, (TR464)P70.CB) [> -999.000 = 6.500 < 8.500] w=0.463 to nn1000 # Constraint # added constraint: bonus constraint((TR464)R64.CB, (TR464)E75.CB) [> -999.000 = 6.500 < 8.500] w=0.464 to nn1000 # command:# SetCost created cost = # ) # command:CPU_time= 7.454 sec, elapsed time= 8.121 sec. # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp8/TR464/ # command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # command:# fraction of real conformation used = 1.000 # GDT_score = -74.275 # GDT_score(maxd=8.000,maxw=2.900)= -77.244 # GDT_score(maxd=8.000,maxw=3.200)= -73.596 # GDT_score(maxd=8.000,maxw=3.500)= -70.306 # GDT_score(maxd=10.000,maxw=3.800)= -73.035 # GDT_score(maxd=10.000,maxw=4.000)= -70.976 # GDT_score(maxd=10.000,maxw=4.200)= -69.029 # GDT_score(maxd=12.000,maxw=4.300)= -72.403 # GDT_score(maxd=12.000,maxw=4.500)= -70.510 # GDT_score(maxd=12.000,maxw=4.700)= -68.638 # GDT_score(maxd=14.000,maxw=5.200)= -67.510 # GDT_score(maxd=14.000,maxw=5.500)= -64.893 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 806 rmsd (weighted)= 3.36626 (unweighted)= 3.71544 superimposing iter= 1 total_weight= 1861.41 rmsd (weighted)= 1.707 (unweighted)= 3.73548 superimposing iter= 2 total_weight= 790.811 rmsd (weighted)= 1.37881 (unweighted)= 3.75049 superimposing iter= 3 total_weight= 595.22 rmsd (weighted)= 1.2895 (unweighted)= 3.76394 superimposing iter= 4 total_weight= 558.383 rmsd (weighted)= 1.24563 (unweighted)= 3.77867 superimposing iter= 5 total_weight= 549.913 rmsd (weighted)= 1.2123 (unweighted)= 3.79508 # command:# Prefix for output files set to decoys/ # command:# request to SCWRL produces command: ulimit -t 63 ; scwrl3 -i /var/tmp/to_scwrl_888101653.pdb -s /var/tmp/to_scwrl_888101653.seq -o /var/tmp/from_scwrl_888101653.pdb > /var/tmp/scwrl_888101653.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_888101653.pdb # conformation set from SCWRL output # command:# naming current conformation model1-scwrl # command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # command:# fraction of real conformation used = 1.000 # GDT_score = -74.275 # GDT_score(maxd=8.000,maxw=2.900)= -77.441 # GDT_score(maxd=8.000,maxw=3.200)= -73.840 # GDT_score(maxd=8.000,maxw=3.500)= -70.544 # GDT_score(maxd=10.000,maxw=3.800)= -73.254 # GDT_score(maxd=10.000,maxw=4.000)= -71.215 # GDT_score(maxd=10.000,maxw=4.200)= -69.271 # GDT_score(maxd=12.000,maxw=4.300)= -72.625 # GDT_score(maxd=12.000,maxw=4.500)= -70.737 # GDT_score(maxd=12.000,maxw=4.700)= -68.943 # GDT_score(maxd=14.000,maxw=5.200)= -67.837 # GDT_score(maxd=14.000,maxw=5.500)= -65.251 # command:# request to SCWRL produces command: ulimit -t 63 ; scwrl3 -i /var/tmp/to_scwrl_1432293483.pdb -s /var/tmp/to_scwrl_1432293483.seq -o /var/tmp/from_scwrl_1432293483.pdb > /var/tmp/scwrl_1432293483.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1432293483.pdb # conformation set from SCWRL output # command:# naming current conformation model2-scwrl # command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 30 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1.000 # GDT_score = -78.623 # GDT_score(maxd=8.000,maxw=2.900)= -83.028 # GDT_score(maxd=8.000,maxw=3.200)= -79.157 # GDT_score(maxd=8.000,maxw=3.500)= -75.046 # GDT_score(maxd=10.000,maxw=3.800)= -77.434 # GDT_score(maxd=10.000,maxw=4.000)= -74.851 # GDT_score(maxd=10.000,maxw=4.200)= -72.390 # GDT_score(maxd=12.000,maxw=4.300)= -75.957 # GDT_score(maxd=12.000,maxw=4.500)= -73.588 # GDT_score(maxd=12.000,maxw=4.700)= -71.360 # GDT_score(maxd=14.000,maxw=5.200)= -69.706 # GDT_score(maxd=14.000,maxw=5.500)= -66.684 # command:# request to SCWRL produces command: ulimit -t 63 ; scwrl3 -i /var/tmp/to_scwrl_945959805.pdb -s /var/tmp/to_scwrl_945959805.seq -o /var/tmp/from_scwrl_945959805.pdb > /var/tmp/scwrl_945959805.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_945959805.pdb # conformation set from SCWRL output # command:# naming current conformation model3-scwrl # command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1.000 # GDT_score = -77.174 # GDT_score(maxd=8.000,maxw=2.900)= -80.959 # GDT_score(maxd=8.000,maxw=3.200)= -77.497 # GDT_score(maxd=8.000,maxw=3.500)= -74.101 # GDT_score(maxd=10.000,maxw=3.800)= -76.539 # GDT_score(maxd=10.000,maxw=4.000)= -74.247 # GDT_score(maxd=10.000,maxw=4.200)= -72.010 # GDT_score(maxd=12.000,maxw=4.300)= -75.434 # GDT_score(maxd=12.000,maxw=4.500)= -73.250 # GDT_score(maxd=12.000,maxw=4.700)= -71.059 # GDT_score(maxd=14.000,maxw=5.200)= -69.450 # GDT_score(maxd=14.000,maxw=5.500)= -66.359 # command:# request to SCWRL produces command: ulimit -t 63 ; scwrl3 -i /var/tmp/to_scwrl_2142449106.pdb -s /var/tmp/to_scwrl_2142449106.seq -o /var/tmp/from_scwrl_2142449106.pdb > /var/tmp/scwrl_2142449106.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2142449106.pdb # conformation set from SCWRL output # command:# naming current conformation model4-scwrl # command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # command:# fraction of real conformation used = 1.000 # GDT_score = -80.072 # GDT_score(maxd=8.000,maxw=2.900)= -83.022 # GDT_score(maxd=8.000,maxw=3.200)= -79.696 # GDT_score(maxd=8.000,maxw=3.500)= -76.135 # GDT_score(maxd=10.000,maxw=3.800)= -78.388 # GDT_score(maxd=10.000,maxw=4.000)= -76.174 # GDT_score(maxd=10.000,maxw=4.200)= -73.936 # GDT_score(maxd=12.000,maxw=4.300)= -77.247 # GDT_score(maxd=12.000,maxw=4.500)= -75.066 # GDT_score(maxd=12.000,maxw=4.700)= -72.854 # GDT_score(maxd=14.000,maxw=5.200)= -71.088 # GDT_score(maxd=14.000,maxw=5.500)= -67.993 # command:# request to SCWRL produces command: ulimit -t 63 ; scwrl3 -i /var/tmp/to_scwrl_951888201.pdb -s /var/tmp/to_scwrl_951888201.seq -o /var/tmp/from_scwrl_951888201.pdb > /var/tmp/scwrl_951888201.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_951888201.pdb # conformation set from SCWRL output # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp8/TR464/decoys/ # command:# ReadConformPDB reading from PDB file TR464.try1-opt2.pdb looking for model 1 # Found a chain break before 34 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1.000 # GDT_score = -41.304 # GDT_score(maxd=8.000,maxw=2.900)= -41.129 # GDT_score(maxd=8.000,maxw=3.200)= -40.083 # GDT_score(maxd=8.000,maxw=3.500)= -38.850 # GDT_score(maxd=10.000,maxw=3.800)= -40.830 # GDT_score(maxd=10.000,maxw=4.000)= -39.880 # GDT_score(maxd=10.000,maxw=4.200)= -38.888 # GDT_score(maxd=12.000,maxw=4.300)= -41.652 # GDT_score(maxd=12.000,maxw=4.500)= -40.638 # GDT_score(maxd=12.000,maxw=4.700)= -39.694 # GDT_score(maxd=14.000,maxw=5.200)= -40.366 # GDT_score(maxd=14.000,maxw=5.500)= -38.955 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 806 rmsd (weighted)= 10.9906 (unweighted)= 11.2841 superimposing iter= 1 total_weight= 1074.58 rmsd (weighted)= 7.48996 (unweighted)= 11.4201 superimposing iter= 2 total_weight= 691.786 rmsd (weighted)= 6.34384 (unweighted)= 11.7358 superimposing iter= 3 total_weight= 753.349 rmsd (weighted)= 5.15701 (unweighted)= 12.043 superimposing iter= 4 total_weight= 747.699 rmsd (weighted)= 4.23383 (unweighted)= 12.2342 superimposing iter= 5 total_weight= 699.032 rmsd (weighted)= 3.56922 (unweighted)= 12.3969 # command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp8/TR464/ # command:# ReadConformPDB reading from PDB file TR464.undertaker-align.pdb looking for model 1 WARNING: atoms too close: (TR464)G43.C and (TR464)L50.C only 0 apart, perturbing (TR464)L50.C WARNING: atoms too close: (TR464)S44.N and (TR464)H51.N only 0 apart, perturbing (TR464)S44.N WARNING: atoms too close: (TR464)S44.CA and (TR464)H51.CA only 0 apart, perturbing (TR464)S44.CA # WARNING: incomplete conformation TR464 can't currently be optimized by undertaker # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.493 # GDT_score = -35.870 # GDT_score(maxd=8.000,maxw=2.900)= -36.620 # GDT_score(maxd=8.000,maxw=3.200)= -36.072 # GDT_score(maxd=8.000,maxw=3.500)= -35.205 # GDT_score(maxd=10.000,maxw=3.800)= -35.615 # GDT_score(maxd=10.000,maxw=4.000)= -34.959 # GDT_score(maxd=10.000,maxw=4.200)= -34.172 # GDT_score(maxd=12.000,maxw=4.300)= -35.344 # GDT_score(maxd=12.000,maxw=4.500)= -34.572 # GDT_score(maxd=12.000,maxw=4.700)= -33.781 # GDT_score(maxd=14.000,maxw=5.200)= -33.193 # GDT_score(maxd=14.000,maxw=5.500)= -31.952 # command:# ReadConformPDB reading from PDB file TR464.undertaker-align.pdb looking for model 2 WARNING: atoms too close: (TR464)A41.C and (TR464)E52.C only 0 apart, perturbing (TR464)E52.C WARNING: atoms too close: (TR464)D42.N and (TR464)A53.N only 0 apart, perturbing (TR464)D42.N WARNING: atoms too close: (TR464)D42.CA and (TR464)A53.CA only 0 apart, perturbing (TR464)D42.CA # WARNING: incomplete conformation TR464 can't currently be optimized by undertaker # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.594 # GDT_score = -27.174 # GDT_score(maxd=8.000,maxw=2.900)= -26.292 # GDT_score(maxd=8.000,maxw=3.200)= -25.519 # GDT_score(maxd=8.000,maxw=3.500)= -24.597 # GDT_score(maxd=10.000,maxw=3.800)= -25.992 # GDT_score(maxd=10.000,maxw=4.000)= -25.360 # GDT_score(maxd=10.000,maxw=4.200)= -24.747 # GDT_score(maxd=12.000,maxw=4.300)= -26.546 # GDT_score(maxd=12.000,maxw=4.500)= -25.909 # GDT_score(maxd=12.000,maxw=4.700)= -25.251 # GDT_score(maxd=14.000,maxw=5.200)= -25.414 # GDT_score(maxd=14.000,maxw=5.500)= -24.502 # command:# ReadConformPDB reading from PDB file TR464.undertaker-align.pdb looking for model 3 WARNING: atoms too close: (TR464)I33.C and (TR464)D42.C only 0 apart, perturbing (TR464)D42.C WARNING: atoms too close: (TR464)A34.N and (TR464)G43.N only 0 apart, perturbing (TR464)A34.N WARNING: atoms too close: (TR464)A34.CA and (TR464)G43.CA only 0 apart, perturbing (TR464)A34.CA WARNING: atoms too close: (TR464)D67.C and (TR464)P70.C only 0 apart, perturbing (TR464)P70.C WARNING: atoms too close: (TR464)S68.N and (TR464)V71.N only 0 apart, perturbing (TR464)S68.N WARNING: atoms too close: (TR464)S68.CA and (TR464)V71.CA only 0 apart, perturbing (TR464)S68.CA # WARNING: incomplete conformation TR464 can't currently be optimized by undertaker # command:# naming current conformation align3 # command:# ReadConformPDB reading from PDB file TR464.undertaker-align.pdb looking for model 4 # WARNING: incomplete conformation TR464 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:# ReadConformPDB reading from PDB file TR464.undertaker-align.pdb looking for model 5 # WARNING: incomplete conformation TR464 can't currently be optimized by undertaker # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # ReadConformPDB reading from PDB file TR464.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try1-init.pdb.gz looking for model 1 WARNING: atoms too close: (TR464)S44.N and (TR464)H51.N only 4.1e-05 apart, perturbing (TR464)H51.N WARNING: atoms too close: (TR464)S44.CA and (TR464)H51.CA only 2.90012e-05 apart, perturbing (TR464)H51.CA # Found a chain break before 33 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 34 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 34 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 34 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try1-opt3.gromacs0.pdb.gz looking for model 1 # Found a chain break before 34 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try1-opt3.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 34 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try1-opt3.pdb.gz looking for model 1 # Found a chain break before 34 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try1-opt3.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 34 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try10-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try10-opt1.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try10-opt2.pdb.gz looking for model 1 # Found a chain break before 61 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try10-opt3.gromacs0.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try10-opt3.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try10-opt3.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try10-opt3.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try11-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 61 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try11-opt1.pdb.gz looking for model 1 # Found a chain break before 61 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try11-opt2.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try11-opt3.gromacs0.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try11-opt3.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try11-opt3.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try11-opt3.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try12-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try12-opt1.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try12-opt2.pdb.gz looking for model 1 # Found a chain break before 32 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try12-opt3.gromacs0.pdb.gz looking for model 1 # Found a chain break before 32 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try12-opt3.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 32 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try12-opt3.pdb.gz looking for model 1 # Found a chain break before 61 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try12-opt3.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 61 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try13-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 20 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try13-opt1.pdb.gz looking for model 1 # Found a chain break before 20 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try13-opt2.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try13-opt3.gromacs0.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try13-opt3.gromacs0.repack-nonPC.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try13-opt3.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try13-opt3.repack-nonPC.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try14-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 64 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try14-opt1.pdb.gz looking for model 1 # Found a chain break before 64 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try14-opt2.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try14-opt3.gromacs0.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try14-opt3.gromacs0.repack-nonPC.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try14-opt3.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try14-opt3.repack-nonPC.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try15-opt1-scwrl.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try15-opt1.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try15-opt2.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try15-opt3.gromacs0.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try15-opt3.gromacs0.repack-nonPC.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try15-opt3.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try15-opt3.repack-nonPC.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try16-opt1-scwrl.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try16-opt1.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try16-opt2.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try16-opt3.gromacs0.pdb.gz looking for model 1 # Found a chain break before 20 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try16-opt3.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 20 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try16-opt3.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try16-opt3.repack-nonPC.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try17-init.pdb.gz looking for model 1 # Found a chain break before 18 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try17-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 57 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try17-opt1.pdb.gz looking for model 1 # Found a chain break before 57 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try17-opt2.pdb.gz looking for model 1 # Found a chain break before 60 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try17-opt3.gromacs0.pdb.gz looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try17-opt3.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try17-opt3.pdb.gz looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try17-opt3.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try18-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 42 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try18-opt1.pdb.gz looking for model 1 # Found a chain break before 42 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try18-opt2.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try18-opt3.gromacs0.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try18-opt3.gromacs0.repack-nonPC.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try18-opt3.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try18-opt3.repack-nonPC.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try19-opt1-scwrl.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try19-opt1.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try19-opt2.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try19-opt3.gromacs0.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try19-opt3.gromacs0.repack-nonPC.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try19-opt3.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try19-opt3.repack-nonPC.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try2-opt1-scwrl.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try2-opt1.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try2-opt2.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try2-opt3.gromacs0.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try2-opt3.gromacs0.repack-nonPC.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try2-opt3.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try2-opt3.repack-nonPC.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try20-opt1-scwrl.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try20-opt1.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try20-opt2.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try20-opt3.gromacs0.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try20-opt3.gromacs0.repack-nonPC.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try20-opt3.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try20-opt3.repack-nonPC.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try3-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try3-opt1.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try3-opt2.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try3-opt3.gromacs0.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try3-opt3.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try3-opt3.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try3-opt3.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try4-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try4-opt1.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try4-opt2.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try4-opt3.gromacs0.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try4-opt3.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try4-opt3.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try4-opt3.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try5-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try5-opt1.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try5-opt2.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try5-opt3.gromacs0.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try5-opt3.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try5-opt3.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try5-opt3.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try6-init.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try6-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 29 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try6-opt1.pdb.gz looking for model 1 # Found a chain break before 29 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try6-opt2.pdb.gz looking for model 1 # Found a chain break before 29 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try6-opt3.gromacs0.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try6-opt3.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try6-opt3.pdb.gz looking for model 1 # Found a chain break before 29 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try6-opt3.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 29 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try7-init.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file TR464.try7-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try7-opt1.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try7-opt2.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try7-opt3.gromacs0.pdb.gz looking for model 1 # Found a chain break before 34 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try7-opt3.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 34 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try7-opt3.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try7-opt3.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try8-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try8-opt1.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try8-opt2.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try8-opt3.gromacs0.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try8-opt3.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try8-opt3.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try8-opt3.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try9-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try9-opt1.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try9-opt2.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try9-opt3.gromacs0.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try9-opt3.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try9-opt3.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.try9-opt3.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file TR464.tryd209-opt3.gromacs0.pdb.gz looking for model 1 Error: Reading chain '' from PDB file TR464.tryd209-opt3.gromacs0.pdb.gz failed---no such chain. # ReadConformPDB reading from PDB file chimera-try16-try17.pdb.gz looking for model 1 # Found a chain break before 44 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera-try2-MQAU1.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera-try2-try7.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera-try5-try12.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera-try5-try9.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file from-MQAU1-opt3.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file from-MQAUC7-opt3-gromacs.pdb.gz looking for model 1 # Found a chain break before 67 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file from-MQAX1-opt3.pdb.gz looking for model 1 # Found a chain break before 62 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file from-SAM-T06-server1.pdb.gz looking for model 1 # Found a chain break before 67 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file from-dimer-try21-opt3.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file from-dimer-try22-opt3.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file from-dimer-try23-repack.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file ../dimer/decoys/TR464.try21-opt1-scwrl.pdb.gz looking for chain 'A' model 1 # ReadConformPDB reading from PDB file ../dimer/decoys/TR464.try21-opt1.pdb.gz looking for chain 'A' model 1 # ReadConformPDB reading from PDB file ../dimer/decoys/TR464.try21-opt2.pdb.gz looking for chain 'A' model 1 # ReadConformPDB reading from PDB file ../dimer/decoys/TR464.try21-opt3.pdb.gz looking for chain 'A' model 1 # ReadConformPDB reading from PDB file ../dimer/decoys/TR464.try21-opt3.repack-nonPC.pdb.gz looking for chain 'A' model 1 # ReadConformPDB reading from PDB file ../dimer/decoys/TR464.try21-opt3.unpack.gromacs0.pdb.gz looking for chain 'A' model 1 # ReadConformPDB reading from PDB file ../dimer/decoys/TR464.try21-opt3.unpack.gromacs0.repack-nonPC.pdb.gz looking for chain 'A' model 1 # ReadConformPDB reading from PDB file ../dimer/decoys/TR464.try21-opt3.unpack.pdb.gz looking for chain 'A' model 1 # ReadConformPDB reading from PDB file ../dimer/decoys/TR464.try22-opt1-scwrl.pdb.gz looking for chain 'A' model 1 # ReadConformPDB reading from PDB file ../dimer/decoys/TR464.try22-opt1.pdb.gz looking for chain 'A' model 1 # ReadConformPDB reading from PDB file ../dimer/decoys/TR464.try22-opt2.pdb.gz looking for chain 'A' model 1 # ReadConformPDB reading from PDB file ../dimer/decoys/TR464.try22-opt3.pdb.gz looking for chain 'A' model 1 # ReadConformPDB reading from PDB file ../dimer/decoys/TR464.try22-opt3.repack-nonPC.pdb.gz looking for chain 'A' model 1 # ReadConformPDB reading from PDB file ../dimer/decoys/TR464.try22-opt3.unpack.gromacs0.pdb.gz looking for chain 'A' model 1 # ReadConformPDB reading from PDB file ../dimer/decoys/TR464.try22-opt3.unpack.gromacs0.repack-nonPC.pdb.gz looking for chain 'A' model 1 # ReadConformPDB reading from PDB file ../dimer/decoys/TR464.try22-opt3.unpack.pdb.gz looking for chain 'A' model 1 # ReadConformPDB reading from PDB file ../dimer/decoys/TR464.try23-opt1-scwrl.pdb.gz looking for chain 'A' model 1 # ReadConformPDB reading from PDB file ../dimer/decoys/TR464.try23-opt1.pdb.gz looking for chain 'A' model 1 # ReadConformPDB reading from PDB file ../dimer/decoys/TR464.try23-opt2.pdb.gz looking for chain 'A' model 1 # ReadConformPDB reading from PDB file ../dimer/decoys/TR464.try23-opt3.pdb.gz looking for chain 'A' model 1 # ReadConformPDB reading from PDB file ../dimer/decoys/TR464.try23-opt3.repack-nonPC.pdb.gz looking for chain 'A' model 1 # ReadConformPDB reading from PDB file ../dimer/decoys/TR464.try23-opt3.unpack.gromacs0.pdb.gz looking for chain 'A' model 1 # ReadConformPDB reading from PDB file ../dimer/decoys/TR464.try23-opt3.unpack.gromacs0.repack-nonPC.pdb.gz looking for chain 'A' model 1 # ReadConformPDB reading from PDB file ../dimer/decoys/TR464.try23-opt3.unpack.pdb.gz looking for chain 'A' model 1 # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-TR464-2hf1.pdb.gz looking for chain 'A' model 1 # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-TR464-2pk7.pdb.gz looking for chain 'A' model 1 # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-try11-2hf1.pdb.gz looking for chain 'A' model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-try11-2pk7.pdb.gz looking for chain 'A' model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-try16-2hf1.pdb.gz looking for chain 'A' model 1 # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-try16-2pk7.pdb.gz looking for chain 'A' model 1 # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-try2-2hf1.pdb.gz looking for chain 'A' model 1 # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-try2-2pk7.pdb.gz looking for chain 'A' model 1 # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-try20-2hf1.pdb.gz looking for chain 'A' model 1 # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-try20-2pk7.pdb.gz looking for chain 'A' model 1 # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-try20-try22.pdb.gz looking for chain 'A' model 1 # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-try5-2hf1.pdb.gz looking for chain 'A' model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-try5-2pk7.pdb.gz looking for chain 'A' model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # command:CPU_time= 12.692 sec, elapsed time= 23.471 sec. # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate.rdb # command:# CostConform Warning: Couldn't open file decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot or decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot.gz for input Trying /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot # Reading spots from /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot dimer//dimer-try5-2pk7 costs 0.000 real_cost = -133.813 dimer//dimer-try5-2hf1 costs 0.000 real_cost = -133.780 dimer//dimer-try20-try22 costs 0.000 real_cost = -83.063 dimer//dimer-try20-2pk7 costs 0.000 real_cost = -83.019 dimer//dimer-try20-2hf1 costs 0.000 real_cost = -83.021 dimer//dimer-try2-2pk7 costs 0.000 real_cost = -117.590 dimer//dimer-try2-2hf1 costs 0.000 real_cost = -117.620 dimer//dimer-try16-2pk7 costs 0.000 real_cost = -86.046 dimer//dimer-try16-2hf1 costs 0.000 real_cost = -86.044 dimer//dimer-try11-2pk7 costs 0.000 real_cost = -124.767 dimer//dimer-try11-2hf1 costs 0.000 real_cost = -124.766 dimer//dimer-TR464-2pk7 costs 0.000 real_cost = -96.612 dimer//dimer-TR464-2hf1 costs 0.000 real_cost = -96.612 dimer//try23-opt3.unpack costs 0.000 real_cost = -82.623 dimer//try23-opt3.unpack.gromacs0.repack-nonPC costs 0.000 real_cost = -85.484 dimer//try23-opt3.unpack.gromacs0 costs 0.000 real_cost = -72.773 dimer//try23-opt3.repack-nonPC costs 0.000 real_cost = -97.203 dimer//try23-opt3 costs 0.000 real_cost = -82.623 dimer//try23-opt2 costs 0.000 real_cost = -81.581 dimer//try23-opt1 costs 0.000 real_cost = -81.506 dimer//try23-opt1-scwrl costs 0.000 real_cost = -98.124 dimer//try22-opt3.unpack costs 0.000 real_cost = -79.922 dimer//try22-opt3.unpack.gromacs0.repack-nonPC costs 0.000 real_cost = -86.072 dimer//try22-opt3.unpack.gromacs0 costs 0.000 real_cost = -72.969 dimer//try22-opt3.repack-nonPC costs 0.000 real_cost = -94.021 dimer//try22-opt3 costs 0.000 real_cost = -79.922 dimer//try22-opt2 costs 0.000 real_cost = -79.843 dimer//try22-opt1 costs 0.000 real_cost = -84.251 dimer//try22-opt1-scwrl costs 0.000 real_cost = -94.464 dimer//try21-opt3.unpack costs 0.000 real_cost = -79.694 dimer//try21-opt3.unpack.gromacs0.repack-nonPC costs 0.000 real_cost = -88.588 dimer//try21-opt3.unpack.gromacs0 costs 0.000 real_cost = -74.361 dimer//try21-opt3.repack-nonPC costs 0.000 real_cost = -93.403 dimer//try21-opt3 costs 0.000 real_cost = -79.694 dimer//try21-opt2 costs 0.000 real_cost = -85.445 dimer//try21-opt1 costs 0.000 real_cost = -84.886 dimer//try21-opt1-scwrl costs 0.000 real_cost = -95.314 from-dimer-try23-repack.pdb.gz costs 0.000 real_cost = -85.484 from-dimer-try22-opt3.pdb.gz costs 0.000 real_cost = -79.922 from-dimer-try21-opt3.pdb.gz costs 0.000 real_cost = -79.694 from-SAM-T06-server1.pdb.gz costs 0.000 real_cost = -9.744 from-MQAX1-opt3.pdb.gz costs 0.000 real_cost = -52.851 from-MQAUC7-opt3-gromacs.pdb.gz costs 0.000 real_cost = -30.488 from-MQAU1-opt3.pdb.gz costs 0.000 real_cost = -16.598 chimera-try5-try9.pdb.gz costs 0.000 real_cost = -83.951 chimera-try5-try12.pdb.gz costs 0.000 real_cost = -113.104 chimera-try2-try7.pdb.gz costs 0.000 real_cost = -75.399 chimera-try2-MQAU1.pdb.gz costs 0.000 real_cost = -117.520 chimera-try16-try17.pdb.gz costs 0.000 real_cost = -85.316 TR464.try9-opt3.repack-nonPC.pdb.gz costs 0.000 real_cost = -85.421 TR464.try9-opt3.pdb.gz costs 0.000 real_cost = -85.180 TR464.try9-opt3.gromacs0.repack-nonPC.pdb.gz costs 0.000 real_cost = -82.218 TR464.try9-opt3.gromacs0.pdb.gz costs 0.000 real_cost = -79.106 TR464.try9-opt2.pdb.gz costs 0.000 real_cost = -89.242 TR464.try9-opt1.pdb.gz costs 0.000 real_cost = -85.945 TR464.try9-opt1-scwrl.pdb.gz costs 0.000 real_cost = -93.561 TR464.try8-opt3.repack-nonPC.pdb.gz costs 0.000 real_cost = -92.404 TR464.try8-opt3.pdb.gz costs 0.000 real_cost = -92.660 TR464.try8-opt3.gromacs0.repack-nonPC.pdb.gz costs 0.000 real_cost = -89.123 TR464.try8-opt3.gromacs0.pdb.gz costs 0.000 real_cost = -88.604 TR464.try8-opt2.pdb.gz costs 0.000 real_cost = -90.980 TR464.try8-opt1.pdb.gz costs 0.000 real_cost = -95.843 TR464.try8-opt1-scwrl.pdb.gz costs 0.000 real_cost = -100.183 TR464.try7-opt3.repack-nonPC.pdb.gz costs 0.000 real_cost = 77.596 TR464.try7-opt3.pdb.gz costs 0.000 real_cost = 84.688 TR464.try7-opt3.gromacs0.repack-nonPC.pdb.gz costs 0.000 real_cost = 85.182 TR464.try7-opt3.gromacs0.pdb.gz costs 0.000 real_cost = 86.403 TR464.try7-opt2.pdb.gz costs 0.000 real_cost = 89.833 TR464.try7-opt1.pdb.gz costs 0.000 real_cost = 93.447 TR464.try7-opt1-scwrl.pdb.gz costs 0.000 real_cost = 88.081 TR464.try7-init.pdb.gz costs 0.000 real_cost = 115.685 TR464.try6-opt3.repack-nonPC.pdb.gz costs 0.000 real_cost = 92.010 TR464.try6-opt3.pdb.gz costs 0.000 real_cost = 100.589 TR464.try6-opt3.gromacs0.repack-nonPC.pdb.gz costs 0.000 real_cost = 95.886 TR464.try6-opt3.gromacs0.pdb.gz costs 0.000 real_cost = 103.146 TR464.try6-opt2.pdb.gz costs 0.000 real_cost = 98.350 TR464.try6-opt1.pdb.gz costs 0.000 real_cost = 100.861 TR464.try6-opt1-scwrl.pdb.gz costs 0.000 real_cost = 96.980 TR464.try6-init.pdb.gz costs 0.000 real_cost = 106.330 TR464.try5-opt3.repack-nonPC.pdb.gz costs 0.000 real_cost = -143.827 TR464.try5-opt3.pdb.gz costs 0.000 real_cost = -133.814 TR464.try5-opt3.gromacs0.repack-nonPC.pdb.gz costs 0.000 real_cost = -140.843 TR464.try5-opt3.gromacs0.pdb.gz costs 0.000 real_cost = -131.877 TR464.try5-opt2.pdb.gz costs 0.000 real_cost = -137.575 TR464.try5-opt1.pdb.gz costs 0.000 real_cost = -136.885 TR464.try5-opt1-scwrl.pdb.gz costs 0.000 real_cost = -149.288 TR464.try4-opt3.repack-nonPC.pdb.gz costs 0.000 real_cost = -140.284 TR464.try4-opt3.pdb.gz costs 0.000 real_cost = -139.776 TR464.try4-opt3.gromacs0.repack-nonPC.pdb.gz costs 0.000 real_cost = -135.177 TR464.try4-opt3.gromacs0.pdb.gz costs 0.000 real_cost = -135.307 TR464.try4-opt2.pdb.gz costs 0.000 real_cost = -139.184 TR464.try4-opt1.pdb.gz costs 0.000 real_cost = -141.958 TR464.try4-opt1-scwrl.pdb.gz costs 0.000 real_cost = -148.125 TR464.try3-opt3.repack-nonPC.pdb.gz costs 0.000 real_cost = -147.996 TR464.try3-opt3.pdb.gz costs 0.000 real_cost = -154.418 TR464.try3-opt3.gromacs0.repack-nonPC.pdb.gz costs 0.000 real_cost = -147.680 TR464.try3-opt3.gromacs0.pdb.gz costs 0.000 real_cost = -152.880 TR464.try3-opt2.pdb.gz costs 0.000 real_cost = -151.102 TR464.try3-opt1.pdb.gz costs 0.000 real_cost = -154.339 TR464.try3-opt1-scwrl.pdb.gz costs 0.000 real_cost = -157.105 TR464.try20-opt3.repack-nonPC.pdb.gz costs 0.000 real_cost = -98.965 TR464.try20-opt3.pdb.gz costs 0.000 real_cost = -83.043 TR464.try20-opt3.gromacs0.repack-nonPC.pdb.gz costs 0.000 real_cost = -90.252 TR464.try20-opt3.gromacs0.pdb.gz costs 0.000 real_cost = -79.213 TR464.try20-opt2.pdb.gz costs 0.000 real_cost = -83.982 TR464.try20-opt1.pdb.gz costs 0.000 real_cost = -83.733 TR464.try20-opt1-scwrl.pdb.gz costs 0.000 real_cost = -100.170 TR464.try2-opt3.repack-nonPC.pdb.gz costs 0.000 real_cost = -116.475 TR464.try2-opt3.pdb.gz costs 0.000 real_cost = -117.564 TR464.try2-opt3.gromacs0.repack-nonPC.pdb.gz costs 0.000 real_cost = -109.876 TR464.try2-opt3.gromacs0.pdb.gz costs 0.000 real_cost = -110.215 TR464.try2-opt2.pdb.gz costs 0.000 real_cost = -105.054 TR464.try2-opt1.pdb.gz costs 0.000 real_cost = -104.755 TR464.try2-opt1-scwrl.pdb.gz costs 0.000 real_cost = -109.922 TR464.try19-opt3.repack-nonPC.pdb.gz costs 0.000 real_cost = -95.233 TR464.try19-opt3.pdb.gz costs 0.000 real_cost = -89.464 TR464.try19-opt3.gromacs0.repack-nonPC.pdb.gz costs 0.000 real_cost = -99.628 TR464.try19-opt3.gromacs0.pdb.gz costs 0.000 real_cost = -94.972 TR464.try19-opt2.pdb.gz costs 0.000 real_cost = -91.328 TR464.try19-opt1.pdb.gz costs 0.000 real_cost = -92.749 TR464.try19-opt1-scwrl.pdb.gz costs 0.000 real_cost = -93.567 TR464.try18-opt3.repack-nonPC.pdb.gz costs 0.000 real_cost = -98.735 TR464.try18-opt3.pdb.gz costs 0.000 real_cost = -83.837 TR464.try18-opt3.gromacs0.repack-nonPC.pdb.gz costs 0.000 real_cost = -91.164 TR464.try18-opt3.gromacs0.pdb.gz costs 0.000 real_cost = -78.954 TR464.try18-opt2.pdb.gz costs 0.000 real_cost = -88.454 TR464.try18-opt1.pdb.gz costs 0.000 real_cost = -91.113 TR464.try18-opt1-scwrl.pdb.gz costs 0.000 real_cost = -107.232 TR464.try17-opt3.repack-nonPC.pdb.gz costs 0.000 real_cost = -8.274 TR464.try17-opt3.pdb.gz costs 0.000 real_cost = -7.109 TR464.try17-opt3.gromacs0.repack-nonPC.pdb.gz costs 0.000 real_cost = 3.264 TR464.try17-opt3.gromacs0.pdb.gz costs 0.000 real_cost = 5.303 TR464.try17-opt2.pdb.gz costs 0.000 real_cost = -11.293 TR464.try17-opt1.pdb.gz costs 0.000 real_cost = -9.025 TR464.try17-opt1-scwrl.pdb.gz costs 0.000 real_cost = -9.233 TR464.try17-init.pdb.gz costs 0.000 real_cost = 143.316 TR464.try16-opt3.repack-nonPC.pdb.gz costs 0.000 real_cost = -97.491 TR464.try16-opt3.pdb.gz costs 0.000 real_cost = -86.033 TR464.try16-opt3.gromacs0.repack-nonPC.pdb.gz costs 0.000 real_cost = -99.072 TR464.try16-opt3.gromacs0.pdb.gz costs 0.000 real_cost = -86.090 TR464.try16-opt2.pdb.gz costs 0.000 real_cost = -87.273 TR464.try16-opt1.pdb.gz costs 0.000 real_cost = -86.159 TR464.try16-opt1-scwrl.pdb.gz costs 0.000 real_cost = -101.948 TR464.try15-opt3.repack-nonPC.pdb.gz costs 0.000 real_cost = -99.700 TR464.try15-opt3.pdb.gz costs 0.000 real_cost = -90.285 TR464.try15-opt3.gromacs0.repack-nonPC.pdb.gz costs 0.000 real_cost = -95.851 TR464.try15-opt3.gromacs0.pdb.gz costs 0.000 real_cost = -88.837 TR464.try15-opt2.pdb.gz costs 0.000 real_cost = -92.339 TR464.try15-opt1.pdb.gz costs 0.000 real_cost = -94.082 TR464.try15-opt1-scwrl.pdb.gz costs 0.000 real_cost = -103.309 TR464.try14-opt3.repack-nonPC.pdb.gz costs 0.000 real_cost = -95.028 TR464.try14-opt3.pdb.gz costs 0.000 real_cost = -85.086 TR464.try14-opt3.gromacs0.repack-nonPC.pdb.gz costs 0.000 real_cost = -94.406 TR464.try14-opt3.gromacs0.pdb.gz costs 0.000 real_cost = -85.459 TR464.try14-opt2.pdb.gz costs 0.000 real_cost = -85.776 TR464.try14-opt1.pdb.gz costs 0.000 real_cost = -88.746 TR464.try14-opt1-scwrl.pdb.gz costs 0.000 real_cost = -103.278 TR464.try13-opt3.repack-nonPC.pdb.gz costs 0.000 real_cost = -105.158 TR464.try13-opt3.pdb.gz costs 0.000 real_cost = -96.835 TR464.try13-opt3.gromacs0.repack-nonPC.pdb.gz costs 0.000 real_cost = -104.166 TR464.try13-opt3.gromacs0.pdb.gz costs 0.000 real_cost = -93.250 TR464.try13-opt2.pdb.gz costs 0.000 real_cost = -99.335 TR464.try13-opt1.pdb.gz costs 0.000 real_cost = -101.441 TR464.try13-opt1-scwrl.pdb.gz costs 0.000 real_cost = -120.405 TR464.try12-opt3.repack-nonPC.pdb.gz costs 0.000 real_cost = -2.127 TR464.try12-opt3.pdb.gz costs 0.000 real_cost = -0.590 TR464.try12-opt3.gromacs0.repack-nonPC.pdb.gz costs 0.000 real_cost = 4.211 TR464.try12-opt3.gromacs0.pdb.gz costs 0.000 real_cost = 8.562 TR464.try12-opt2.pdb.gz costs 0.000 real_cost = 1.050 TR464.try12-opt1.pdb.gz costs 0.000 real_cost = -6.318 TR464.try12-opt1-scwrl.pdb.gz costs 0.000 real_cost = -20.901 TR464.try11-opt3.repack-nonPC.pdb.gz costs 0.000 real_cost = -135.772 TR464.try11-opt3.pdb.gz costs 0.000 real_cost = -124.770 TR464.try11-opt3.gromacs0.repack-nonPC.pdb.gz costs 0.000 real_cost = -130.052 TR464.try11-opt3.gromacs0.pdb.gz costs 0.000 real_cost = -121.310 TR464.try11-opt2.pdb.gz costs 0.000 real_cost = -132.798 TR464.try11-opt1.pdb.gz costs 0.000 real_cost = -129.820 TR464.try11-opt1-scwrl.pdb.gz costs 0.000 real_cost = -152.828 TR464.try10-opt3.repack-nonPC.pdb.gz costs 0.000 real_cost = -147.626 TR464.try10-opt3.pdb.gz costs 0.000 real_cost = -136.198 TR464.try10-opt3.gromacs0.repack-nonPC.pdb.gz costs 0.000 real_cost = -143.819 TR464.try10-opt3.gromacs0.pdb.gz costs 0.000 real_cost = -135.054 TR464.try10-opt2.pdb.gz costs 0.000 real_cost = -135.277 TR464.try10-opt1.pdb.gz costs 0.000 real_cost = -136.888 TR464.try10-opt1-scwrl.pdb.gz costs 0.000 real_cost = -160.579 TR464.try1-opt3.repack-nonPC.pdb.gz costs 0.000 real_cost = 129.977 TR464.try1-opt3.pdb.gz costs 0.000 real_cost = 139.079 TR464.try1-opt3.gromacs0.repack-nonPC.pdb.gz costs 0.000 real_cost = 142.124 TR464.try1-opt3.gromacs0.pdb.gz costs 0.000 real_cost = 147.501 TR464.try1-opt2.pdb.gz costs 0.000 real_cost = 143.912 TR464.try1-opt1.pdb.gz costs 0.000 real_cost = 142.201 TR464.try1-opt1-scwrl.pdb.gz costs 0.000 real_cost = 143.616 TR464.try1-init.pdb.gz costs 0.000 real_cost = 142.274 TR464.pdb.gz costs 0.000 real_cost = -96.617 ../model5.ts-submitted costs 0.000 real_cost = -109.887 ../model4.ts-submitted costs 0.000 real_cost = -134.015 ../model3.ts-submitted costs 0.000 real_cost = -124.760 ../model2.ts-submitted costs 0.000 real_cost = -86.031 ../model1.ts-submitted costs 0.000 real_cost = -85.464 align5 costs 0.000 real_cost = 240.274 align4 costs 0.000 real_cost = 125.829 align3 costs 0.000 real_cost = 319.276 align2 costs 0.000 real_cost = 222.026 align1 costs 0.000 real_cost = 219.461 TR464.try1-opt2.pdb costs 0.000 real_cost = 143.895 model5-scwrl costs 0.000 real_cost = -111.772 model5.ts-submitted costs 0.000 real_cost = -109.887 model4-scwrl costs 0.000 real_cost = -150.690 model4.ts-submitted costs 0.000 real_cost = -134.015 model3-scwrl costs 0.000 real_cost = -148.260 model3.ts-submitted costs 0.000 real_cost = -124.760 model2-scwrl costs 0.000 real_cost = -101.838 model2.ts-submitted costs 0.000 real_cost = -86.031 model1-scwrl costs 0.000 real_cost = -86.115 model1.ts-submitted costs 0.000 real_cost = -85.503 2k5rA costs 0.000 real_cost = -895.000 # command:CPU_time= 36.963 sec, elapsed time= 49.061 sec. # command:rm -f sort.tmp /projects/compbio/bin/sorttbl real_cost < decoys/evaluate.rdb > sort.tmp mv -f sort.tmp decoys/evaluate.rdb