Results

Matches to PDB90 <pdb90.html>

    * mol1 <#mol1> 


  DaliLite: Structural Neighbours


    Query: mol1

Matches are sorted by Z-score. Similarities with a Z-score lower than 2
are spurious.


  Summary

  No:  Chain   Z    rmsd lali nres  %id  Description
   1:  2hf1-B  3.7  1.4   39    59   28   MOLECULE: TETRAACYLDISACCHARIDE-1-P 4-KINASE;                        
   2:  2hf1-A  3.7  1.5   39    61   28   MOLECULE: TETRAACYLDISACCHARIDE-1-P 4-KINASE;                        
   3:  2pk7-B  3.6  1.2   38    60   29   MOLECULE: UNCHARACTERIZED PROTEIN;                                   
   4:  2pk7-A  3.5  1.1   38    64   29   MOLECULE: UNCHARACTERIZED PROTEIN;                                   
   5:  2jr6-A  2.6  1.6   39    68   26   MOLECULE: UPF0434 PROTEIN NMA0874;                                   
   6:  2jny-A  2.5  2.1   38    61   37   MOLECULE: UNCHARACTERIZED BCR;                                       

Notation:

    * Chain: PDB entry code plus chain identifier
    * Z: normalized Z-score that depends on the size of the structures.
      The program optimises a weighted sum of similarities of
      intramolecular distances.
    * rmsd: root-mean-square deviation of C-alpha atoms in the
      least-squares superimposition of the structurally equivalent
      C-alpha atoms. The program does not optimise rmsd, this is only
      reported for your information.
    * lali: number of structurally equivalent residues
    * nres: number of amino acids in the protein
    * %id: percentage of identical amino acids over all structurally
      equivalent residues
    * Description: the COMPND record from the PDB entry 


  Pairwise Structural Alignments

Notation: three-state secondary structure definitions by DSSP (reduced
to H=helix, E=sheet, L=coil) are shown above the amino acid sequence.
Structurally equivalent residues are in uppercase, structurally
non-equivalent residues (e.g. in loops) are in lowercase. Amino acid
identities are marked by vertical bars.


    No 1: Query=mol1 Sbjct=2hf1B Z-score=3.7

DSSP  ...............LLLLHhhhhhhhhhhhhlhhhhhhlllllllllEEEEELLLLEEE
Query ...............SLLESkglealnkaiasgtvqradgsiqnqslhEALITRDRKQVF   45
ident                    |                              ||       |
Sbjct kfleilvcplckgplVFDKS...........................kDELICKGDRLAF   33
DSSP  lleeellllllllllEEELL...........................lLEEEELLLLEEE


DSSP  EEELLEELLLLLLLEELLLLLL...l
Query RIEDSIPVLLPEEAIATIQIAN...f   68
ident  | | ||  |  ||            
Sbjct PIKDGIPXXLESEARELAPEEEvkle   59
DSSP  EEELLEELLLHHHLEELLHHHHhhhl


    No 2: Query=mol1 Sbjct=2hf1A Z-score=3.7

DSSP  .................LLLLHhhhhhhhhhhhhlhhhhhhlllllllllEEEEELLLLE
Query .................SLLESkglealnkaiasgtvqradgsiqnqslhEALITRDRKQ   43
ident                      |                              ||      
Sbjct dakfleilvcplckgplVFDKS...........................kDELICKGDRL   33
DSSP  lllleeellllllllllEEELL...........................lLEEEELLLLE


DSSP  EEEEELLEELLLLLLLEELLLLLL...l
Query VFRIEDSIPVLLPEEAIATIQIAN...f   68
ident  | | | ||  |  ||            
Sbjct AFPIKDGIPXXLESEARELAPEEEvkle   61
DSSP  EEEEELLEELLLHHHLEELLHHHHhhhl


    No 3: Query=mol1 Sbjct=2pk7B Z-score=3.6

DSSP  ................LLLLHhhhhhhhhhhhhlhhhhhhlllllllllEEEEELLLLEE
Query ................SLLESkglealnkaiasgtvqradgsiqnqslhEALITRDRKQV   44
ident                  |                                 ||       
Sbjct tklldilacpickgplKLSAD...........................kTELISKGAGLA   33
DSSP  llhhhhllllllllllEELLL...........................lLEEEEHHHLEE


DSSP  EEEELLEELLLLLLLEELLLLL...ll
Query FRIEDSIPVLLPEEAIATIQIA...nf   68
ident   | | ||| |  ||            
Sbjct YPIRDGIPVXLESEARTLTTEErldkl   60
DSSP  EEEELLEELLLLLLLEELLHHHhllll


    No 4: Query=mol1 Sbjct=2pk7A Z-score=3.5

DSSP  ................LLLLHhhhhhhhhhhhhlhhhhhhlllllllllEEEEELLLLEE
Query ................SLLESkglealnkaiasgtvqradgsiqnqslhEALITRDRKQV   44
ident                  |                                 ||       
Sbjct tklldilacpickgplKLSAD...........................kTELISKGAGLA   33
DSSP  llhhhlllllllllllEELLL...........................lLEEEELLLLEE


DSSP  EEEELLEELLLLLLLEELLLLL.......ll
Query FRIEDSIPVLLPEEAIATIQIA.......nf   68
ident   | | ||| |  ||                
Sbjct YPIRDGIPVXLESEARTLTTEErldklehhh   64
DSSP  EEEELLEELLLHHHLEELLHHHhllllllll


    No 5: Query=mol1 Sbjct=2jr6A Z-score=2.6

DSSP  .................LLLLHhhhhhhhhhhhhlhhhhhhllllllllLEEEEELLLLE
Query .................SLLESkglealnkaiasgtvqradgsiqnqslHEALITRDRKQ   43
ident                                                     |  |  | 
Sbjct mekkfldilvcpvtkgrLEYHQ..........................dKQELWSRQAKL   34
DSSP  lllllllllllllllllLEEEL..........................lLLEEEELLLLE


DSSP  EEEEELLEELLLLLLLEELLLLL.........ll
Query VFRIEDSIPVLLPEEAIATIQIA.........nf   68
ident    | | ||  |  ||                  
Sbjct AYPIKDGIPYMLENEARPLSEEElkalehhhhhh   68
DSSP  EEEEELLEELLLLLLLEELLHHHhhlllllllll


    No 6: Query=mol1 Sbjct=2jnyA Z-score=2.5

DSSP  ....................LLLLHhhhhhhhhhhhhlhhhhhhllllllllLEEEEELL
Query ....................SLLESkglealnkaiasgtvqradgsiqnqslHEALITRD   40
ident                       |||                              |    
Sbjct msldpqllevlacpkdkgplRYLES...........................EQLLVNER   33
DSSP  llllhhhlllllllllllllEEELL...........................LLEEEELL


DSSP  LLEEEEEELLEELLLLLLLEELLLLlll
Query RKQVFRIEDSIPVLLPEEAIATIQIanf   68
ident      || | |||||  ||         
Sbjct LNLAYRIDDGIPVLLIDEATEWTPNnle   61
DSSP  LLEEEEEELLEELLLLLLLEELLLLlll