Best Alignments for TR464

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2hf1A	5.5918e-01	2hf1A/TR464-2hf1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2j6aA	9.2361e+00	2j6aA/TR464-2j6aA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1v54J	4.8954e+01	1v54J/TR464-1v54J-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.23.4.1
2oggA	6.4894e+01	2oggA/TR464-2oggA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2fa1A	6.9495e+01	2fa1A/TR464-2fa1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.190.1.2
2occJ	7.0131e+01	2occJ/TR464-2occJ-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.23.4.1
1hjiB	7.7370e+01	1hjiB/TR464-1hjiB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1tjyA	7.9363e+01	1tjyA/TR464-1tjyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.93.1.1
1z1zA	8.3162e+01	1z1zA/TR464-1z1zA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.323.1.1
1suwA	8.3734e+01	1suwA/TR464-1suwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	e.52.1.1
2p19A	8.3973e+01	2p19A/TR464-2p19A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2pkhA	8.7674e+01	2pkhA/TR464-2pkhA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1gca	8.7725e+01	1gca/TR464-1gca-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2fn9A	9.0351e+01	2fn9A/TR464-2fn9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2fvyA	9.0821e+01	2fvyA/TR464-2fvyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.93.1.1
1cmxA	9.5389e+01	1cmxA/TR464-1cmxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1k7jA	9.5534e+01	1k7jA/TR464-1k7jA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.115.1.1
3cnvA	9.5829e+01	3cnvA/TR464-3cnvA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ikkA	9.7214e+01	2ikkA/TR464-2ikkA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1l4dB	1.0017e+02	1l4dB/TR464-1l4dB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.15.5.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001